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. 2018 Sep 19;6:126. doi: 10.3389/fbioe.2018.00126

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Copyright © 2018 Ramasamy, Avci, Dorow, Chong, Gizzi, Steidle, Schick and Röhrle.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Overview of implemented workflow. The proposed workflow that converts the DT-MRI scans into patient-specific residual limb model is illustrated here. MATLAB handles data processing and transfer between the various software tools. Fibre tracking is done using MedINRIA. Binary muscle masks are created from the voxel segmentation data, which are loaded into Simpleware ScanIP. After image processing in ScanIP, the FE mesh is generated with the ScanIP +FE module. Finally, the extracted fibres are embedded into the FE mesh.