KEY RESOURCES TABLE.
REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Mouse monoclonal V5-HRP (clone V5–10) | Sigma | Cat#: V2260; RRID: AB_261857 |
Rabbit polyclonal anti-PB2 | Mehle and Doudna, 2008 | N/A |
Goat polyclonal anti-RNP | BEI Resources | Cat#: NR-3133 |
Mouse monoclonal anti-FLAG (clone M2) | Sigma | Cat#: F1804; RRID: AB_262044 |
Rabbit polyclonal anti-V5 | Bethyl | Cat#: A190–120A; RRID: AB_67586 |
Goat anti-mouse Alexa Fluor 594 | Invitrogen | Cat#: A-11032; RRID: AB_2534091 |
Goat anti-rabbit Alexa Fluor 488 | Invitrogen | Cat#: A-11008; RRID: AB_143165 |
Agarose resin: anti-FLAG (clone M2) | Sigma | Cat#: A2220 |
Bacterial and Virus Strains | ||
E. coli: strain BL21 Rosetta 2(DE3)pLysS | Novagen | Cat#: 70956 |
Influenza A virus: A/WSN/33 (H1N1; WSN) | Neumann et al., 2005 | N/A |
Influenza A virus: A/green-winged teal/Ohio/175/1986 (H2N1; S009) |
Mehle and Doudna, 2009 | N/A |
Chemicals, Peptides, and Recombinant Proteins | ||
Magnetic beads: MagneGST glutathione particles | Promega | Cat#: V8611 |
MMLV Reverse Transcriptase | Kirui et al., 2016b | N/A |
T4 Polynucleotide Kinase | NEB | Cat#: M0201L |
ECL | GE Healthcare | Cat#: GERPN2236 |
Critical Commercial Assays | ||
MycoAlert | Lonza | Cat#: LT07–218 |
Renilla luciferase assay system | Promega | Cat#: E2810 |
Experimental Models: Cell Lines | ||
Human: 293T | ATCC | CRL-3216 |
Human: A549 | ATCC | CCL-185 |
Cow: MDBK | ATCC | CCL-22 |
Dog: MDCK | ATCC | CCL-34 |
Chicken: LMH | ATCC | CRL-2117 |
Experimental Models: Organisms/Strains | ||
WSN-PB2-FLAG | Kirui et al., 2016b | N/A |
WSN-PB2-K627E-FLAG | This paper | N/A |
S009 SRK | Mehle and Doudna, 2009 | N/A |
Oligonucleotides | ||
Primer: NP77F-TGATTTCGATGTCACTCTGTGAGT | Kirui et al., 2016b | N/A |
Primer: NP77R-GCAGGGTAGATAATCACTGACAGAG | Kirui et al., 2016b | N/A |
Primer: 5 s- ACCCTGCTTAGCTTCCGAGA | Kirui et al., 2016b | N/A |
Recombinant DNA | ||
Plasmid: pENTR chANP32A29 | This paper | N/A |
Plasmid: pENTR chANP32AD | This paper | N/A |
Plasmid: pENTR chANP32A33 | This paper | N/A |
Plasmid: pDONR221 huANP32A | DNASU | HsCD00042415 |
Plasmid: pDONR221 huANP32A+29 | This paper | N/A |
Plasmid: pENTR PB2 627 domain | This paper | N/A |
Plasmid: pENTR PB2 627-NLS | This paper | N/A |
Plasmid: pcDNA6.2/V5-DEST | Invitrogen | Cat#: 12489027 |
Plasmid: pENTR/TEV/D-TOPO | Invitrogen | Cat#: K253520 |
Plasmid: pHGGWA | Busso et al., 2005 | N/A |
Plasmid: pHMGWA | Busso et al., 2005 | N/A |
Plasmid: pLX304 | Yang et al., 2011 | Addgene Cat#: 25890 |
Plasmid: pHH21 vNA-Luc | Mehle and Doudna, 2008 | N/A |
Plasmid: pHH21 3–8 vNA-Luc | This paper | N/A |
Plasmid: pHH21 NP-77 | Kirui et al., 2016b | N/A |
Plasmid: pcDNA PB1a | This paper | N/A |
Software and Algorithms | ||
HISAT2 v2.1.0 | Kim et al., 2015 | www.ccb.jhu.edu/people/infphilo |
BBDuk v37.75 | Bushnell, 2015 | https://sourceforge.net/projects/bbmap/ |
FastQC v0.11.5 | Andrews, 2010 | https://www.bioinformatics.babraham.ac.uk/ projects/fastqc/ |
Samtools v1.6 | Li et al., 2009 | http://www.htslib.org/download/ |
IGV v2.4.4 | Katz et al., 2015 | https://software.broadinstitute.org/software/igv/ |