Table 1.

Number of RNA sequencing reads obtained for each sample. Cleaned reads represent the number remaining after quality control. Reads were then mapped to the annotated guppy genome

Site	Replicate	Raw reads	Cleaned reads	Mapped reads (%)
Guanapo HP	1	26,870,174	22,586,691	20,766,878 (92.0)
Guanapo HP	2	39,086,645	32,622,487	30,141,929 (92.4)
Upper Lalaja	1	21,814,280	18,212,053	16,555,056 (90.9)
Upper Lalaja	2	18,881,969	15,857,847	14,703,350 (92.7)
Lower Lalaja	1	31,063,239	26,112,166	24,316,619 (93.1)
Lower Lalaja	2	23,971,652	20,331,650	18,682,796 (91.9)
Taylor	1	32,035,905	25,681,736	23,205,491 (90.4)
Taylor	2	25,701,105	20,676,206	18,621,562 (90.1)
Caigual	1	24,075,451	19,278,165	17,624,322 (91.4)
Caigual	2	40,809,576	32,639,238	29,653,795 (90.9)