TABLE 2.
Primer sequences
Primer function and name | Sequencea |
---|---|
Y2H screen | |
EcoRI-UL135Y2HF | 5′-GGGAATTCCATATGTCCTTATTTACCCAGCGCCGAGGCCGCAAGCGATC-3′ |
UL135R-BamHI | 5′-CGCGGATCCTCAGGTCATCTGCATTGACTCGGCGTCCTTCATGAC-3′ |
pGAD-FWD | 5′-TAATACGACTCACTATAGGGCGA-3′ |
pGAD-REV | 5′-AGATGGTGCACGATGCACAG-3′ |
Mutagenesis | |
UL135ΔSH3cI-FWD | 5′-PHOS-CGCCTACGCCGGCGGTCCG-3′ |
UL135ΔSH3c1-REV | 5′-GCCGCCTCTTGCGCCCGG-3′ |
UL135ΔSH3cII-FWD | 5′-PHOS-CCGGGGCCAAGAAGCGGCCGCCTACG-3′ |
UL135ΔSH3cII-REV | 5′-GCGCCGGAGGTGGCTTCCAGGA-3′ |
UL135ΔAtypSH3-FWD | 5′-PHOS-CCGCTGCAGTCGGCTGGACACCG-3′ |
UL135ΔAtypSH3-REV | 5′-GTTTCGTGGGCGCCGGTGTTTTCT-3′ |
UL135ΔCIN85#1-FWD | 5′-GCCGCTAAGAACCTGAGCACGCCGCCCA-3′ |
UL135ΔCIN85#1-REV | 5′-PHOS-CGCGGGTATCGGCGTCGGGG-3′ |
UL135ΔCIN85#2-5-FWD | 5′-GCCGCTCTGCCGCGCACCGTCGGGCTGGAGAATCTCTCGAAGGTGGGACTCTCGTGTCCCTGTCCCCGAGCCGCTACGCCGACGGAGCCGACCA-3′ |
UL135ΔCIN85#2-5-REV | 5′-PHOS-ATTAGCGGCTGGCTTTTGTGGCGTCGGCGTTTTCGGGAAGGGAGCGGCCGTCACCGGCGGTGTCCAG-3′ |
Subcloning | |
NheI-HA-GGGG-Abi1-FWD | 5′-GGGGGCTAGCACCATGTACCCATACGATGTTCCAGATTACGCGGGCGGTGGCGGTGCAGAGCTGCAGATGTTACTAGAGG-3′ |
Abi1-REV-XhoI | 5′-GGGGCTCGAGTTAATCAGTATAGTGCATGATTGATTCAAC-3′ |
XbaI-CIN85-FWD | 5′-ATGGTGGAGGCCATAGTGGAGTTT-3′ |
CIN85-HA-REV-BamHI | 5′-ATGGGATCCTCAGGCGTAGTCGGGCACGTCGTAGGGGTATTTTGATTGTAGAGCTTTCTTTATG-3′ |
Recombinant virus construction | |
UL135-Fwd-63nt | 5′-GTGTTTGGACAATAAACACATTCCTTGCCAAAAAATGACGTTTCCAGAAATCCAAGGCATAAATGTCCGTACACCGGCC-3′ |
Myc-REV-UL135 | 5′-GAGGGAAGGCGTGTGCTGCTATACAACTGTACAACGGACGCGCTCGCTGTTTCGGTCTCACAGATCCTCTTCTGAGATGA-3′ |
UL135-GalK-ins-FWD | 5′-AAAAGGCGGTGCAGAGCGTCATGAAGGACGCCGAGTCAATGCAGATGACCCCTGTTGACAATTAATCATCGGCA-3′ |
UL135-GalK-ins-REV | 5′-GTGTGCTGCTATACAACTGTACAACGGACGCGCTCGCTGTTTCGGTCTCATCAGCACTGTCCTGCTCCTT-3′ |
UL135-3xFLAG-FWD | 5′-AAAAGGCGGTGCAGAGCGTCATGAAGGACGCCGAGTCAATGCAGATGACCGATTATAAAGATGATGATGATAAA-3′ |
UL135-3xFLAG-REV | 5′-GTGTGCTGCTATACAACTGTACAACGGACGCGCTCGCTGTTTCGGTCTCACTTGTCGTCGTCGTCCTTGTAGTC-3′ |
PHOS, 5′ phosphorylation of oligonucleotide.