TABLE 3.
Statistics for good-quality MAGsa
| Sample type and MAG |
Phylum identification |
Closest relative(s) |
Identification method |
Coverage | % GC | % complete |
% redundant |
Length (Mbp) |
No. of scaffolds |
N50 (kbp) |
|---|---|---|---|---|---|---|---|---|---|---|
| Leachate | ||||||||||
| LB9 | Proteobacteria |
Desulfococcus oleovorans |
RP16 tree | 7.4 | 51.7 | 96.4 | 6.7 | 3.46 | 198 | 23.2 |
| LB19 | Bacteroidetes | LB7, LB17 | RP16 tree | 10.3 | 52.9 | 95.6 | 3.9 | 3.26 | 50 | 94.6 |
| LB32 | Tenericutes | LB18_1 | RP16 tree | 16.5 | 28.7 | 95.0 | 3.6 | 1.18 | 52 | 45.9 |
| LB22 | Firmicutes |
Tepidimicrobium xylanilyticum |
RP16 tree | 8.1 | 43.3 | 94.2 | 6.2 | 1.58 | 137 | 12.6 |
| LB18_1 | Tenericutes | LB32 | RP16 tree | 26.2 | 33.4 | 92.1 | 3.7 | 1.10 | 75 | 18.6 |
| LB10 | Bacteroidetes | LB12 | RP16 tree | 8.0 | 32.8 | 91.3 | 3.0 | 2.31 | 204 | 12.2 |
| LB7 | Bacteroidetes | LB19, LB17 | RP16 tree | 99.5 | 42.2 | 88.5 | 5.0 | 2.48 | 223 | 12.5 |
| LB27_3 | CP CPR2 | Uncultivated CPR2 bacteria |
RP16 tree | 22.2 | 37.5 | 88.2 | 2.2 | 0.74 | 8 | 17.9 |
| LB8 | Proteobacteria |
Desulfotignum
phosphitoxidans |
RP16 tree | 7.9 | 53.3 | 85.3 | 4.2 | 2.56 | 207 | 14.9 |
| LB12 | Bacteroidetes | LB10 | RP16 tree | 12.4 | 43.5 | 79.8 | 3.0 | 2.23 | 182 | 15.1 |
| LB26 | Firmicutes | LB26 | RP16 tree | 8.2 | 40.3 | 79.1 | 7.8 | 0.98 | 102 | 9.6 |
| LB16 | Firmicutes | Clostridiaceae | RP16 tree | 8.9 | 47.0 | 71.9 | 1.9 | 1.85 | 152 | 15.3 |
| LB4_2 | Proteobacteria |
Desulfuromusa kysingii |
RP16 tree | 77.4 | 57.6 | 70.7 | 0.8 | 1.13 | 115 | 10.6 |
| River | ||||||||||
| RB10 | Proteobacteria | Loktanella, RB4_2 | RP16 tree | 22.4 | 60.9 | 86.4 | 5.4 | 3.53 | 14 | 39.0 |
| RB5 | Proteobacteria | Simidula | RP16 tree | 9.3 | 42.1 | 85.4 | 3.6 | 4.27 | 177 | 36.0 |
| RB12 | Proteobacteria | Rhodobacter | Anvi’o | 29.6 | 64.7 | 71.6 | 4.2 | 3.43 | 33 | 14.5 |
Good-quality bins were defined as greater than 70% complete and less than 10% redundant. Taxonomic identification was based on a 16 ribosomal protein concatenated gene phylogeny or total gene taxonomic affiliation as calculated by Anvi’o (18). See Table S1 for statistics for all 55 leachate and 33 river MAGs.