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. 2018 Sep 26;3(5):e00346-18. doi: 10.1128/mSphere.00346-18

TABLE 3.

Statistics for good-quality MAGsa

Sample type
and MAG
Phylum
identification
Closest
relative(s)
Identification
method
Coverage % GC %
complete
%
redundant
Length
(Mbp)
No. of
scaffolds
N50
(kbp)
Leachate
    LB9 Proteobacteria Desulfococcus
oleovorans
RP16 tree 7.4 51.7 96.4 6.7 3.46 198 23.2
    LB19 Bacteroidetes LB7, LB17 RP16 tree 10.3 52.9 95.6 3.9 3.26 50 94.6
    LB32 Tenericutes LB18_1 RP16 tree 16.5 28.7 95.0 3.6 1.18 52 45.9
    LB22 Firmicutes Tepidimicrobium
xylanilyticum
RP16 tree 8.1 43.3 94.2 6.2 1.58 137 12.6
    LB18_1 Tenericutes LB32 RP16 tree 26.2 33.4 92.1 3.7 1.10 75 18.6
    LB10 Bacteroidetes LB12 RP16 tree 8.0 32.8 91.3 3.0 2.31 204 12.2
    LB7 Bacteroidetes LB19, LB17 RP16 tree 99.5 42.2 88.5 5.0 2.48 223 12.5
    LB27_3 CP CPR2 Uncultivated CPR2
bacteria
RP16 tree 22.2 37.5 88.2 2.2 0.74 8 17.9
    LB8 Proteobacteria Desulfotignum
phosphitoxidans
RP16 tree 7.9 53.3 85.3 4.2 2.56 207 14.9
    LB12 Bacteroidetes LB10 RP16 tree 12.4 43.5 79.8 3.0 2.23 182 15.1
    LB26 Firmicutes LB26 RP16 tree 8.2 40.3 79.1 7.8 0.98 102 9.6
    LB16 Firmicutes Clostridiaceae RP16 tree 8.9 47.0 71.9 1.9 1.85 152 15.3
    LB4_2 Proteobacteria Desulfuromusa
kysingii
RP16 tree 77.4 57.6 70.7 0.8 1.13 115 10.6
River
    RB10 Proteobacteria Loktanella, RB4_2 RP16 tree 22.4 60.9 86.4 5.4 3.53 14 39.0
    RB5 Proteobacteria Simidula RP16 tree 9.3 42.1 85.4 3.6 4.27 177 36.0
    RB12 Proteobacteria Rhodobacter Anvi’o 29.6 64.7 71.6 4.2 3.43 33 14.5
a

Good-quality bins were defined as greater than 70% complete and less than 10% redundant. Taxonomic identification was based on a 16 ribosomal protein concatenated gene phylogeny or total gene taxonomic affiliation as calculated by Anvi’o (18). See Table S1 for statistics for all 55 leachate and 33 river MAGs.