Table 3.
Excision of PCR Amplicons from DGGE gel and retrieved sequence from BLAST database
| Selected Exised bands | Bacteria with highest % homology | Sequence Accession number | Bacterial phyla | Gene bank number |
|---|---|---|---|---|
| C1a | Bacteroides uniformis(97) | CL03T00C23 | Bacteroidetes | NZ_JH724260 |
| C2b | Bacteroides uniformis(97) | CL03T00C23 | Bacteroidetes | NZ_JH724260 |
| C5a | Bacteroides vulgates(97) | ATCC 8482 | Bacteroidetes | NC_009614.1 |
| G1a | Shigella dysenteriae(98) | Sd197 | Protobacteria | NC_007606.1 |
| G2a | Prevotella copri (96) | DSM 18205 | Bacteroidetes | NZGG703855.1 |
| G4a | Parabacteroides distasonis | ATCC 8503 | Bacteroidetes | NC_009615.1 |
| G4b | Clostridium botulinum (88) | ATCC 3502 | Fermicutis | NC_009495.1 |
| G4c | Bacteroides intestinalis (95) | DSM 17393 | Bacteroidetes | NZ_ABJL02000006. |
| G5a | Prevotella copri (96) | DSM 18205 | Bacteroidetes | NZGG703855.1 |
| G7a | Alistipes putredinis(97) | DSM 17216 | Bacteroidetes | NZ_DS499580.1 |
| G8a | Bacteroides coprocola (96) | DSM 17136 | Bacteroidetes | NZ_DS981502.1 |
| G9a | Prevotella copri (96) | DSM 18205 | Bacteroidetes | NZGG703855.1 |
| G9b | Sporomusa ovata (87) | DSM 2662 | Fermicutis | NZ_ASXP01000005.1 |
| G11a | Bacteroides nordii (86) | CL02T12C05 | Bacteroidetes | NZ_JH724319.1 |
| G14a | Bacteroides fragilis(86) | YCH46 | Bacteroidetes | NC_006347.1 |
| G14b | Prevotella dentasini (91) | JCM 15908 | Bacteroidetes | NZ_BAKG01000039.1 |
| G15a | Bacteroides helcogenes (91) | P 36-108 | Bacteroidetes | NC_014933.1 |
| G15b | Bacteroides paurosaccharolyticus(88) | JCM 15092 | Bacteroidetes | NZ_BAJR01000054.1 |
| G18a | Faecalibacterium prausnitzii (96). | TDY5834930. | Firmicutes | NZ_CZBH01000014.1 |
| G21a | Bacillus sp. (94). | FJAT-25496. | Firmicutes | NZ_LMBY01000086.1 |
| G25a | Enterobacter aerogenes (92) | KCTC 2190 | Proteobacteria | NC_015663.1 |
| G26a | Klebsiella sp.(94). | NODE14. | Proteobacteria | NZ_LGIT01000014.1 |
| G27a | Enterobacter aerogenes (92) | KCTC 2190 | Proteobacteria | NC_015663.1 |
| C10a | Bacteroides plebeius (91) | DSM 17135 | Bacteroidetes | NZ_DS990123.1 |
| C11a | Bacteroides plebeius (91) | DSM 17135 | Bacteroidetes | NZ_DS990123.1 |
| C11b | Faecalibacterium prausnitzii (96). | TDY5834930. | Firmicutes | NZ_CZBH01000014.1 |