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Performance comparison of NetNMF, NMF and TriNMF in terms of purity as well as AUC in simulated datasets. (A and B) The boxplots of purity scores for identified co-modules in 30 realizations on the simulated data with respect to different noise levels. Different thresholds (T = 1 for (A) and T = 1.5 for (B)) are used for selecting features from both factored matrices G1 and G2. (C) The boxplots of AUC scores without any pre-defined parameters in the same 30 realizations.
