Table 3.
The expression of common stress-responsive maize genes and their rice orthologs in plant roots exposed to Cd treatment
| Categories | Maize | Rice | Plant Orthologous Groups | |||
|---|---|---|---|---|---|---|
| Gene ID | Log2FC | maize Annotation | Gene ID | log2FC | rice Annotation | ORTHOMCL |
| Abiotic stress | ||||||
| ZM2G085086 | 2.4 | ZmHIPP27, HMAD isoprenylated protein | Os04g17100 | 3.6 | heavy metal-associated domain (HMAD) OsHIPP42 | MCL4978 |
| ZM2G099003 | 2.6 | Lea5-D-like | Os01g21250 | 2.3 | LEA, late embryogenesis abundant protein | MCL16656 |
| ZM2G012631 | 0.9 | HSP90–2 | Os08g39140 | 1.5 | heat shock protein | MCL313 |
| ZM2G032766 | 2.7 | CaLB domain protein | Os08g44850 | 1.2 | C2 domain containing protein | MCL5451 |
| Transcription factors | ||||||
| ZM2G347043 | 3.4 | NAC49; ZmSNAC1 | Os03g60080 | 3.4 | SNAC1, stress-responsive NAC 1 | MCL15794 |
| ZM2G069146 | 4.2 | dehydration-responsive element-binding protein | Os09g35030 | 3.5 | OsDREB1A | MCL12934 |
| ZM2G061487 | 2.3 | DRE binding factor 1 | Os08g31580 | 1.4 | ERF, ethylene-responsive transcription factor | MCL17488 |
| ZM2G174347 | 1.4 | ERF | Os05g41780 | 1.0 | AP2 domain containing protein | MCL5811 |
| ZM2G068967 | 1.9 | ERF | Os04g52090 | 1.4 | OsAP2–39 | MCL12147 |
| ZM2G438202 | 2.0 | ERF | MCL12147 | |||
| ZM2G474326 | 2.0 | ERF | Os01g54890 | 2.7 | OsERF922 | MCL13082 |
| ZM2G093270 | 1.4 | PLATZ transcription factor | Os10g42410 | 3.7 | zinc-binding protein | MCL17475 |
| ZM2G101058 | 1.3 | GATA28 | Os10g40810 | 0.7 | GATA zinc finger domain protein | MCL1807 |
| ZM2G361210 | 6.7 | C2H2 Zinc finger protein ZAT11 | Os03g60570 | 5.7 | ZFP15, C2H2 zinc finger protein | MCL13769 |
| ZM2G061626 | 5.3 | C2H2 zinc finger protein | Os03g60560 | 7.5 | ZFP182, C2H2 zinc finger protein | MCL13770 |
| ZM2G158328 | 3.3 | WRKY40 | Os01g60600 | 2.0 | WRKY108 | MCL17062 |
| Phytohormone signaling | ||||||
| ZM2G014392 | 4.6 | vp14, 9-cis-epoxycarotenoid dioxygenase | Os03g44380 | 3.4 | OsNCED3, 9-cis-epoxycarotenoid dioxygenase | MCL9668 |
| ZM2G427451 | 0.8 | AIR12 | Os08g41290 | 0.7 | AIR12, auxin-induced in root cultures | MCL9576 |
| ZM2G036351 | 5.3 | ZIM transcription factor | Os03g08330 | 3.5 | OsJAZ10, ZIM domain containing protein | MCL14008 |
| ZM2G173630 | 1.6 | GID1 (GA-insensitive dwarf) | Os05g33730 | −0.7 | gibberellin receptor GID1L2 | MCL4519 |
| ZM2G033846 | 3.3 | caltractin | Os03g19720 | 3.7 | EF hand family protein | MCL5182 |
| ZM2G312661 | 1.8 | Calmodulin | Os03g21380 | 1.5 | OsCML27, Calmodulin-related protein | MCL16352 |
| Cell wall | ||||||
| ZM2G110558 | 1.1 | UDP-glucuronate 4-epimerase | Os02g54890 | 0.9 | UDP-glucuronate 4-epimerase | MCL7320 |
| ZM2G042179 | 0.8 | UDP-glucuronate 4-epimerase | MCL7320 | |||
| ZM2G015886 | 0.7 | Cellulose synthase D4 | Os12g36890 | 0.9 | CSLD4, cellulose synthase-like family D, | MCL85 |
| ZM2G135743 | 1.0 | glycogenin-like starch initiation protein | Os01g65780 | −0.9 | glycosyl transferase | MCL1732 |
| Posttranslational modification | ||||||
| ZM2G172230 | 2.4 | CaseinoLytic Protease ClpD, chloroplastic | Os02g32520 | 1.3 | OsClpD1, early responsive to dehydration ERD1 | MCL2599 |
| ZM2G328785 | 3.5 | ZmPK1, receptor protein kinase | Os11g03820 | −1.3 | S-locus-like receptor protein kinase | MCL8097 |
| ZM2G359986 | 1.8 | Wall-associated receptor kinase-like 20 | Os05g25390 | 2.4 | tyrosine protein kinase | MCL7431 |
| ZM2G443509 | −0.7 | protein phosphatase 2C | Os04g33080 | −1.2 | protein phosphatase 2C | MCL2430 |