Table 1.

The number of PanTools comparisons compared to a naïve all-pairs approach

Dataset	Naïve (millions)	PanTools (thousands)	Fold decrease
Y13	2472	507	4874
Y33	15,979	3415	4679
Y53	41,181	8888	4633
Y73	78,121	16,937	4613
Y93	126,519	27,494	4602
A3	4284	508	8435
A7	23,225	2889	8038
A11	57,382	7229	7938
A15	105,111	12,904	8146
A19	169,570	21,022	8066
M12	81,873	20,094	4074
E600	4,993,364	926,638	5389