Table 4.

Minimum, maximum and average of normalized similarity scores in the homology group of 4 genes using 8 different settings

Gene name (ID)		d1	d2	d3	d4	d5	d6	d7	d8
AP3 (AT3G54340)	Min	95.1	88.1	79.3	79.3	57.5	57.5	57.5	25.0
	Avg	97.0	95.5	91.7	91.7	87.2	87.2	87.2	38.7
	Max	98.8	98.8	98.8	98.8	98.8	98.8	98.8	100.0
AG (AT4G18960)	Min	95.1	85.2	75.7	75.7	56.2	45.0	35.0	25.0
	Avg	96.7	93.6	90.1	89.3	82.6	62.7	52.2	38.7
	Max	99.5	99.5	99.5	98.0	99.5	100.0	100.0	100.0
FLC (AT5G10140)	Min	–	85.1	79.9	65.0	55.0	45.0	35.0	25.0
	Avg	–	87.3	85.2	75.1	68.3	62.7	52.2	38.7
	Max	–	94.4	94.4	100.0	100.0	100.0	100.0	100.0
UBQ1 (AT3G52590)	Min	98.2	96.9	81.7	81.7	57.2	45.0	35.0	25.1
	Avg	99.6	99.3	99.6	99.6	97.2	78.3	72.0	68.5
	Max	100.0	100.0	100.0	100.0	100.0	100.0	100.0	100.0