Table 1.
FBN genes identified in cucumber genome.
| Gene Name | Gene ID | Location on Chromosome (5) | CDS Length (bp) | Protein (aa) | Fibrillin Domain | Best Arabidopsis Homologue | % ID | E-Value |
|---|---|---|---|---|---|---|---|---|
| (IPR006843) (Cdd:pfam04755) | ||||||||
| CsaFBN1 | Csa6M512870.1 (1) (Cucsa.044900.1 (2)) |
Chr6 (26485594..26487860) | 969 | 323 | 98–312 | AT4G04020.1 (FBN1a, FIB1a, AtPGL35) | 60 | 5.1 × 10−96 |
| CsaFBN2 | Csa3M008840.1 (Cucsa.322030.1) | Chr3 (992602..995095) | 1092 | 364 | 139–353 | AT2G35490.1 (FBN2, FIB2, AtPGL40) | 51 | 5.7 × 10−77 |
| CsaFBN3 | Csa1M665380.1 (Cucsa.027640.1) | Chr1 (26931385..26939153) | 732 | 244 | 74–233 | AT3G26070.1 (FBN3a, FIB3a) | 69 | 2.0 × 10−71 |
| CsaFBN4 | Csa3M134880.1 (Cucsa.255550.1) | Chr3 (9072862..9075038) | 870 | 290 | 91–286 | AT3G23400.1 (FBN4, FIB4) | 62 | 1.0 × 10−83 |
| CsaFBN6 | Csa2M379140.1 (Cucsa.161880.1) | Chr2 (19193933..19197291) | 747 | 249 | 79–244 | AT5G19940.1 (FBN6, FIB6) | 58 | 1.3 × 10−72 |
| CsaFBN7 | Csa3M807340.1 (Cucsa.242700.1) | Chr3 (30901949..30909200) | 912 | 304 | 97–280 | AT2G42130.4 (FBN7b, FIB7b) | 72 | 2.2 × 10−97 |
| Csa3M807340.2 (As (3)) | Chr3 (30901949..30907204)(As) | 819 (As) | 273 (As) | 97–243 | AT2G42130.1 (FBN7b, FIB7b) | 72 | 8.1 × 10−82 | |
| CsaFBN8 | Csa3M640570.1 (Cucsa.149720.1) | Chr3 (25041843..25045492) | 837 | 279 | 58–270 | AT2G46910.1 (FBN8, FIB8) | 63 | 1.6 × 10−76 |
| Csa3M640570.2 (As) | Chr3 (25042753..25045492)(As) | 636 (As) | 212 (As) | 58–194 | AT2G46910.1 (FBN8, FIB8) | 66 | 2.6 × 10−53 | |
| CsaFBN9 | Csa6M108600.1 (Cucsa.120630.1) | Chr6 (7303911..7307440) | 642 | 214 | 39–204 | AT4G00030.1 (FBN9, FIB9) | 77 | 2.2 × 10−72 |
| CsaFBN10 | Csa4M286330.1 (Cucsa.153490.1) | Chr4 (11046106..11050268) | 1311 | 437 | 99–275 | AT1G51110.1 (FBN10, FIB10) | 67 | 7.2 × 10−129 |
| CsaFBN11 | Csa3M603030.1 (Cucsa.040680.1 (4)) | Chr3 (23336459..23340819) | 1773 | 590 | 359–443 | AT5G53450.1 (FBN11, AtFib11) | 66 | 9.3 × 10−216 |
(1) Gene id in cucumber genome database in Cucurbit Genomics database (http://cucurbitgenomics.org/organism/2); (2) Gene id in cucumber genome database in Phytozome 11 (https://phytozome.jgi.doe.gov/pz/portal.html#!info?alias=Org_Csativus); (3) As, alternative spliced form predicted in Cucumber genome annotation v2 (http://cucurbitgenomics.org/organism/2); (4) The gene in cucumber genome database in Phytozome 11 encodes 664 amino acids, which is 74 aa larger than those encoded by Csa3M603030.1; (5) Location on chromosome, position of mRNA predicted in cucumber genome v2 (http://cucurbitgenomics.org/organism/2).