Table 4.
Collection date, sequence type (ST), BioSample IDs and accession numbers for the 52 strains of L. monocytogenes analyzed with WGS. Sequences were submitted to the European Nucleotide Archive (ENA)/GenBank.
| Isolate ID | Collection Date | ST | NCBI BioSample | ENA/GenBank accession # |
|---|---|---|---|---|
| 356/04 | 2004 | 2 | SAMN09692013 | QPLL00000000.1 |
| 28/11 | 2011 | 2 | SAMEA4587137 | ERR2522387 |
| 902/11 | 2011 | 6 | SAMEA4587140 | ERR2522390 |
| 4492/11 | 2011 | 6 | SAMEA4587144 | ERR2522394 |
| 4633/11 | 2011 | 6 | SAMEA4587146 | ERR2522396 |
| 4853/11 | 2011 | 2 | SAMEA4587147 | ERR2522397 |
| 5169/11 | 2011 | 6 | SAMEA4587152 | ERR2522402 |
| 5170/11 | 2011 | 6 | SAMEA4587153 | ERR2522403 |
| 5440/11 | 2011 | 3 | SAMEA4587155 | ERR2522405 |
| 9259/11 | 2011 | 6 | SAMEA4587161 | ERR2522411 |
| 3496/12 | 2012 | 451 | SAMEA4587162 | ERR2522412 |
| 10203/11 | 2011 | 1 | SAMEA4587164 | ERR2522414 |
| 378/12 | 2012 | 6 | SAMEA4587165 | ERR2522415 |
| 3772/12 | 2012 | 7 | SAMEA4587173 | ERR2522423 |
| 3941/12 | 2012 | 1 | SAMEA4587175 | ERR2522425 |
| 4093/12 | 2012 | 1 | SAMEA4587176 | ERR2522426 |
| 4244/12 | 2012 | 698 | SAMEA4587177 | ERR2522427 |
| 4832/12 | 2012 | 6 | SAMEA4587183 | ERR2522433 |
| 4691/12 | 2012 | 6 | SAMEA4587184 | ERR2522434 |
| 5079/12 | 2012 | 1 | SAMEA4587185 | ERR2522435 |
| 5054/12 | 2012 | 6 | SAMEA4587188 | ERR2522438 |
| 5227/12 | 2012 | 121 | SAMEA4587191 | ERR2522441 |
| 5348/12 | 2012 | 6 | SAMEA4587193 | ERR2522443 |
| 5821/12 | 2012 | 6 | SAMEA4587244 | ERR2522450 |
| 5827/12 | 2012 | 6 | SAMEA4587245 | ERR2522451 |
| 6087/12 | 2012 | 6 | SAMEA4587246 | ERR2522452 |
| 5981/12 | 2012 | 8 | SAMEA4587248 | ERR2522454 |
| 5921/12 | 2012 | 1 | SAMEA4587249 | ERR2522455 |
| 6301/12 | 2012 | 7 | SAMEA4587252 | ERR2522458 |
| 6334/12 | 2012 | 1 | SAMEA4587253 | ERR2522459 |
| 6547/12 | 2012 | 6 | SAMEA4587254 | ERR2522460 |
| 6836/12 | 2012 | 1 | SAMEA4587257 | ERR2522463 |
| 6906/12 | 2012 | 6 | SAMEA4587259 | ERR2522465 |
| 7813/12 | 2012 | 6 | SAMEA4587263 | ERR2522469 |
| 78/13 | 2013 | 1 | SAMEA4587264 | ERR2522470 |
| 322/13 | 2013 | 698 | SAMEA4587265 | ERR2522471 |
| 618/13 | 2013 | 1 | SAMEA4587267 | ERR2522473 |
| 941/13 | 2013 | 6 | SAMEA4587268 | ERR2522474 |
| 1767/13 | 2013 | 6 | SAMEA4587274 | ERR2522480 |
| 3015/13 | 2013 | 6 | SAMEA4587280 | ERR2522486 |
| 3011/13 | 2013 | 1 | SAMEA4587281 | ERR2522487 |
| 3222/13 | 2013 | 6 | SAMEA4587283 | ERR2522489 |
| 3778/13 | 2013 | 6 | SAMEA4587285 | ERR2522491 |
| 4043/13 | 2013 | 1 | SAMEA4587287 | ERR2522493 |
| 243/14 | 2013 | 20 | SAMEA4587289 | ERR2522495 |
| 4166/13 | 2013 | 6 | SAMEA4587291 | ERR2522497 |
| 4379/13 | 2013 | 6 | SAMEA4587292 | ERR2522498 |
| 4199/13 | 2013 | 37 | SAMEA4587293 | ERR2522499 |
| 4820/13 | 2013 | 6 | SAMEA4587301 | ERR2522507 |
| 5014/13 | 2013 | 8 | SAMEA4587302 | ERR2522508 |
| 5044/13 | 2013 | 6 | SAMEA4587303 | ERR2522509 |
| 5133/13 | 2013 | 8 | SAMEA4587304 | ERR2522510 |