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. 2018 Sep 28;6:174. doi: 10.1186/s40168-018-0542-0

Table 3.

Comparison of metagenomic and metatranscriptomic data (datasets XII and XIII)

Dataset XII Dataset XIII
MTG% MTX% Rho p Ratio MTG% MTX% Rho p Ratio
CutCD 95.68* 83.33 0.09 0.42 0.72 99.67* 68.09 0.11 0.06 0.95
CntAB 33.45* 0.00 nd nd nd 14.79* 0.00 nd nd nd
GrdH 80.58* 48.72 0.27 0.02 0.80 94.06* 31.35 0.09 0.14 0.75
BaiA-I 65.11* 28.21 0.22 0.05 3.15 97.69* 62.38 0.22 < 0.01 1.20
DsrAB 55.40 70.52* 0.50 < 0.01 3.92 87.78 92.76* 0.31 < 0.01 20.7

The percentage of samples harboring individual pathofunctions in metagenomes (MTG%, n = 278 (XII); n = 311 (XIII)) and metatranscriptomes (MTX%, n = 78 (XII); n = 305 (XIII)) as well as correlations between abundance and expression levels (Spearman’s rho and p value) based on matched MTG/MTX samples (n = 78 (XII); n = 304 (XIII)) are shown. Ratio refers to the median RNA/DNA results of matched samples where only pairs that showed values > 0 at both levels were considered. nd: not determined. Seven metatranscriptomic samples and one metagenome from dataset XIII were omitted due to low sequencing depth (< 105 reads). Significant differences (*p < 0.05) between abundance and expression based on generalized linear models are indicated