Table 3.

Recombination events inferred in Plum pox virus strain C complete genomes by the Recombination Detection Program v.4.69 (RDP4).

Event Number	Recombinant	Beginning Breakpoint	Ending Breakpoint	Major Parent	Minor Parent	p Values Calculated with Seven Methods Implemented in RDP4
						RDP	Geneconv	Bootscan	Maxchi	Chimaera	SiScan	3Seq
1	Bg6	664	1723	Tat-4	RU-17sc	3.6 × 10−7	Not detected	7.5 × 10−5	2.7 × 10−4	8.1 × 10−4	1.3 × 10−22	2.1 × 10−8
	Bg26	664	1703
	Bg66	664	1723
	BY101	664	1703
	BY181	664	1703
	GC27	649	1723
	Ka7	664	1723
	Ka15	625	1723
	Ka23	625	1723
	Pul	649	1653
	SoC	664	1723
	SwC	664	1723
	Volk143	664	1723
2	SoC	9096	9756	SwC	Volk143	2.0 × 10−3	7.9 × 10−3	8.1 × 10−3	1.2 × 10−3	9.1 × 10−4	7.4 × 10−3	2.4 × 10−3