Table 2.
Shared genomic regions detected for seed yield-related traits between our GWAS results and previous linkage mapping QTLs.
| Traits Linkage Mapping | Code | LG | Start (bp) | End (bp) | Traits GWAS | LG | SNP Position (bp) |
|---|---|---|---|---|---|---|---|
| Grain number per capsule | Qgn-6 | 6 | 1,739,987 | 2,125,872 | YB | 6 | 1,741,236 |
| YLB | 6 | 2,081,828 | |||||
| Capsule number per plant | Qcn-11 | 9 | 6,032,193 | 8,312,219 | MCNM | 9 | 5,988,865 |
| CNB | 9 | 7,589,997 | |||||
| MCNB | 9 | 7,839,050 | |||||
| Capsule length | Qcl-3 | 3 | 1,566,853 | 2,593,783 | YB | 3 | 2,588,239 |
| YMB | 3 | 2,588,241 | |||||
| Qcl-4 | 5 | 9,840,981 | 10,961,395 | YLB | 5 | 9,857,730 | |
| RMB | 5 | 9,869,746 | |||||
| SWMB | 5 | 9,869,746 | |||||
| TMM | 5 | 9,895,178 | |||||
| WMB | 5 | 9,974,401 | |||||
| TMB | 5 | 10,197,769 | |||||
| TMB | 5 | 10,208,013 | |||||
| YLB | 5 | 10,705,889 | |||||
| SWMB | 5 | 10,773,145 | |||||
| WMB | 5 | 10,781,532 | |||||
| LLM | 5 | 10,786,506 | |||||
| CN | 5 | 10,786,597 | |||||
| LCNM | 5 | 10,790,853 | |||||
| SWLM | 5 | 10,958,834 | |||||
| Qcl-8 | 4 | 11,220,208 | 11,670,895 | LCNM | 4 | 11,649,295 | |
| WMM | 4 | 11,658,278 | |||||
| TSW | 4 | 11,661,092 | |||||
| Qcl-12 | 11 | 14,935,946 | 15,400,039 | LLM | 11 | 14,957,580 | |
| LLM | 11 | 15,003,280 | |||||
| TMM | 11 | 15,137,600 | |||||
| WMM | 11 | 15,137,600 | |||||
| CPMM | 11 | 15,138,140 | |||||
| LLM | 11 | 15,200,435 | |||||
| LMM | 11 | 15,219,964 | |||||
| LMM | 11 | 15,239,947 | |||||
| LMM | 11 | 15,289,738 |