Table 1.
The significant enrichment pathways for DEPs in three taproot thickening stages in radish
| Terms | P-Value | Pathway ID | ||
|---|---|---|---|---|
| S1 vs. S2 | S1 vs. S3 | S2 vs. S3 | ||
| Specifically enrichment in S1 vs. S2 pair | ||||
| Tyrosine metabolism | 0.002338993 | – | – | ko00350 |
| Pyruvate metabolism | 0.003318677 | – | – | ko00640 |
| Isoquinoline alkaloid biosynthesis | 0.005839398 | – | – | ko00950 |
| Tropane, piperidine, and pyridine alkaloid biosynthesis | 0.02102198 | – | – | ko00960 |
| Phenylalanine, tyrosine, and tryptophan biosynthesis | 0.02465798 | – | – | ko00400 |
| Fatty acid metabolism | 0.02649325 | – | – | ko00071 |
| beta-Alanine metabolism | 0.03322849 | – | – | ko00410 |
| Phagosome | 0.04160965 | – | – | ko04145 |
| Specifically enrichment in S1 vs. S3 pair | ||||
| Photosynthesis | – | 2.23E−06 | – | ko00195 |
| Phenylpropanoid biosynthesis | – | 0.001141693 | – | ko00940 |
| Arachidonic acid metabolism | – | 0.00592627 | – | ko00590 |
| Linoleic acid metabolism | – | 0.01070429 | – | ko00591 |
| Oxidative phosphorylation | – | 0.01803258 | – | ko00190 |
| Citrate cycle (TCA cycle) | – | 0.04408532 | – | ko00020 |
| Specifically enrichment in S2 vs. S3 pair | ||||
| Amino sugar and nucleotide sugar metabolism | – | – | 0.007055244 | ko00520 |
| Glycosphingolipid biosynthesis | – | – | 0.02370965 | ko00603 |
| Ether lipid metabolism | – | – | 0.03840109 | ko00565 |
| S1 vs. S2 and S1 vs. S3 pair share | ||||
| Tryptophan metabolism | 0.003174937 | 0.003847518 | – | ko00380 |
| Fructose and mannose metabolism | 0.003546047 | 0.009507623 | – | ko00051 |
| Ubiquinone and other terpenoid–quinone biosynthesis | 0.008722774 | 0.002321026 | – | ko00130 |
| Nitrogen metabolism | 0.0111143 | 0.02068339 | – | ko00910 |
| Glyoxylate and dicarboxylate metabolism | 0.01315227 | 0.00145352 | – | ko00630 |
| Pentose phosphate pathway | 0.0236223 | 0.04274795 | – | ko00030 |
| Glucosinolate biosynthesis | 0.03062338 | 0.03704522 | – | ko00966 |
| Carbon fixation in photosynthetic organisms | 0.03135075 | 3.75E−05 | – | ko00710 |
| Arginine and proline metabolism | 0.03617507 | 0.01826023 | – | ko00330 |
| S1 vs. S2 and S2 vs. S3 pair share | ||||
| Propanoate metabolism | 0.003318677 | – | 0.0138437 | ko00640 |
| Alanine, aspartate, and glutamate metabolism | 0.02117078 | – | 0.003866935 | ko00250 |
| S1 vs. S3 and S2 vs. S3 pair share | ||||
| Cyanoamino acid metabolism | – | 1.69E−05 | 0.03116905 | ko00460 |
| alpha-Linolenic acid metabolism | – | 0.000614791 | 0.009060137 | ko00592 |
| S1 vs. S2, S1 vs. S3, and S2 vs. S3 share | ||||
| Metabolic pathways | 6.47E−06 | 6.29E−14 | 0.000324501 | ko01100 |
| Glycolysis/gluconeogenesis | 6.56E−06 | 0.000968121 | 0.006929212 | ko00010 |
| Biosynthesis of secondary metabolites | 9.98E−06 | 3.34E−06 | 0.001973937 | ko01110 |
| Cysteine and methionine metabolism | 0.000191997 | 0.002653402 | 0.000150698 | ko00270 |
| Ribosome | 0.007452515 | 0.03416924 | 0.03002672 | ko03010 |
| Glutathione metabolism | 0.008876445 | 0.0001046 | 0.003305723 | ko00480 |
| Phenylalanine metabolism | 0.03617507 | 0.004421169 | 0.03331485 | ko00360 |