Antibodies |
|
Mouse monoclonal antibody PY72 |
InVivo Biotech Services |
P172.1 |
Rabbit anti EGFR pY1045
|
Cell Signaling Technology |
Cat. # 2237 |
Rabbit anti EGFR pY1068
|
Cell Signaling Technology |
Cat. # 3777 |
Mouse anti EGFR pY845
|
BD Biosciences |
Cat. # 558381 |
Goat anti EGFR |
R&D Systems |
Cat. # AF231 |
Alexa Fluor® 568 donkey anti-rabbit IgG |
Life Technologies |
Cat. # A10042 |
Alexa Fluor® 568 donkey anti-mouse IgG |
Life Technologies |
Cat. # A10037 |
Alexa Fluor® 647 donkey anti-goat IgG |
Life Technologies |
Cat. # A-21447 |
Alexa Fluor® 647 chicken anti-mouse IgG |
Life Technologies |
Cat. # A-21463 |
Alexa Fluor® 647 donkey anti-rabbit IgG |
Life Technologies |
Cat. # A-31573 |
IRDye® 800CW Donkey anti-Rabbit IgG |
Licor |
Cat. # 926-32213 |
IRDye® 680RD Donkey anti-Mouse IgG |
Licor |
Cat. # 926-68072 |
Goat anti GFP |
Abcam |
Cat. #ab6673 |
Anti-GFP antibody |
Clontech |
Cat. #632375 |
Anti-Sulfenic acid modified cysteine antibody |
Millipore |
Cat. #ABS30 |
Anti-EGFR antibody |
Cell Signaling Technology |
Cat. #4267 |
|
Bacterial and Virus Strains |
|
E. coli (XL10 - Gold ultracompetent) cells |
Stratagene |
Cat. # 200314 |
|
Chemicals, Peptides, and Recombinant Proteins |
|
Dulbecco’s modified Eagle’s medium (DMEM) |
PAN Biotech |
Cat. # P04-01500 |
Dulbecco’s modified Eagle’s medium (DMEM / F12) |
PAN Biotech |
Cat. # P04-41450 |
MEM Amino Acids Solution (50x) |
PAN Biotech |
Cat. # P08 32100 |
Penicillin- Streptomycin |
PAN Biotech |
Cat. # P06 07100 |
Fetal Bovine Serum |
Sigma-Aldrich |
Cat. # F7524 |
EGF |
Sigma-Aldrich |
Cat. # E9644 |
Hydrocortisone |
Sigma-Aldrich |
Cat. #H-0888 |
Cholera toxin |
Sigma-Aldrich |
Cat. #C-8052 |
Insulin |
Sigma-Aldrich |
Cat. #I-1882 |
Cy3.5® NHS ester |
GE Healthcare |
Cat. # PA23501 |
FuGENE6 |
Roche Diagnostics |
Cat. # 11 815 091 |
Roti® Histofix |
Carl Roth |
Cat. # P087 |
Odyssey Blocking buffer |
LI-COR |
Cat. # 927 |
RNA Later |
Thermo Fisher Scientific |
Cat. # AM7020 |
PF6-AM |
Dickinson et al., 2011 |
Prof Christopher J. Chang, University of California, Berkeley |
N-Ethylmaleimide |
Sigma-Aldrich |
Cat. # 128-53-0 |
Dimedone |
Sigma-Aldrich |
Cat. # 38490 |
Phusion Flash High-Fidelity PCR Master Mix |
Thermo Fisher Scientific |
Cat. # F548S |
Herculase II Fusion DNA Polymerase |
Agilent |
Cat. # 600675 |
Triton-X100 |
Serva |
Cat. # 37240 |
Alexa647-Malemide |
Thermo Fisher Scientific |
Cat. # A20347 |
N,N dimethylformamide |
Acros Organics |
Cat. # 348435000 |
Bicine |
Sigma-Aldrich |
Cat. # B3876 |
Diphenyleneiodonium |
Sigma-Aldrich |
Cat. # D2926 |
|
Critical Commercial Assays |
|
MycoAlert Mycoplasma detection kit |
Lonza |
Cat. # LT07-218 |
RNeasy Maxi Kit |
QIAGEN |
Cat. # 75162 |
Oligotex mRNA Midi Kit |
QIAGEN |
Cat. # 70042 |
AffinityScript Multiple Temperature cDNA Synthesis Kit |
Agilent |
Cat. #200436 |
BigDye® Terminator v3.1 Cycle Sequencing Kit |
Thermo Fisher Scientific |
Cat. # 4337455 |
PureYield plasmid Midiprep System |
Promega |
Cat. # A2492 |
NucleoBond® Xtra Midi EF |
Macherey-Nagel |
Cat. # 740420.10 |
|
Experimental Models: Cell Lines |
|
MCF-7 |
ECACC |
Cat. No. 86012803 |
MCF7-EG |
Roda-Navaro and Bastiaens, 2014 |
N/A |
MCF10A |
ATCC |
CRL - 10317 |
|
Oligonucleotides |
|
PTPX and CYBA siRNA SMARTpool |
Dharmacon |
Additional Data Table S3 (separate file) |
|
Recombinant DNA |
|
cHyPer3 |
Bilan et al., 2013 |
Prof. Vsevolod Belousov, Shemyakin–Ovchinnikov Institute of bioorganic chemistry, Moscow |
His-CBD-Intein-(Cys)-hEGF-(Cys) |
Sonntag et al., 2014 |
Prof. Luc Brunsveld, University of Technology, Eindhoven |
cDNA-mCitrine expression plasmid constructs |
This paper |
Additional Data Table S2 (separate file) |
EGFR-mCitrine-N1 |
Baumdick et al., 2015 |
N/A |
PTB-mCherry |
Fueller et al., 2015 |
N/A |
cCbl-BFP |
Fueller et al., 2015 |
N/A |
Rab11-S25N-BFP |
Konitsiotis et al., 2017 |
N/A |
|
Software and Algorithms |
|
CellProfiler |
Kamentsky et al., 2011 |
http://cellprofiler.org |
R Statistical Software |
Foundation for Statistical Computing |
https://www.r-project.org/ |
XPPAUT |
|
www.math.pitt.edu/∼bard/xpp/xpp.html) |
MATLAB |
MathWorks |
http://mathworks.com/ |
Python |
Python Software Foundation |
https://www.python.org/ |
Scikit-image |
Version 0.11.3 |
www.scikit-image.org |
OpenCV |
Version 2.4.8 |
http://opencv.org |
ImageJ/Fiji |
|
https://fiji.sc/ |
IgorPro 6.37 |
Wavemetrics |
www.igorpro.net |
|
Other |
|
7K Zeba Spin Desalting Columns |
Thermo Scientific |
Cat. # 89882 |
Dynabeads® Protein G magnetic beads |
Thermo Fisher Scientific |
Cat. # 10003D |
NuPAGE Novex 4-12% Bis-Tris gels |
ThermoFisher |
Cat. # NP0335BOX |
Cellasic ONIX plates |
Merck Chemicals |
M04S |