Skip to main content
. 2018 Sep 18;2018:3797214. doi: 10.1155/2018/3797214

Table 1.

Computational tools available for designing guide RNAs.

Name Homepage Available RGN Off-target scoring Predicts gRNA activity Off-target hits References
Cas-OFFinder http://www.rgenome.net/cas-offinder/ 7 no no yes [44]

Benchling https://benchling.com/ 1 yes yes yes

Deskgen https://www.deskgen.com/landing/ 1 yes yes yes

CRISPR Design http://crispr.mit.edu/ 1 yes no yes [45]

E-CRISPR http://www.e-crisp.org/E-CRISP/ 1 yes yes yes [46]

CHOPCHOP http://chopchop.cbu.uib.no/ 2 no yes yes [47, 48]

ZiFiT http://zifit.partners.org/ZiFiT/CSquare9Nuclease.aspx 1 yes no yes [49]

sgRNA Designer https://portals.broadinstitute.org/gpp/public/analysis-tools/sgrna-design 2 no yes yes [50, 51]

CRISPRseek http://bioconductor.org/packages/release/bioc/html/CRISPRseek.html 1 yes yes no [52]

CRISPR-Era http://crispr-era.stanford.edu/ 1 yes yes no [53]

Supplementary file: workflow to design in silico gRNAs.