Table 1.
Name | Homepage | Available RGN | Off-target scoring | Predicts gRNA activity | Off-target hits | References |
---|---|---|---|---|---|---|
Cas-OFFinder | http://www.rgenome.net/cas-offinder/ | 7 | no | no | yes | [44] |
| ||||||
Benchling | https://benchling.com/ | 1 | yes | yes | yes | |
| ||||||
Deskgen | https://www.deskgen.com/landing/ | 1 | yes | yes | yes | |
| ||||||
CRISPR Design | http://crispr.mit.edu/ | 1 | yes | no | yes | [45] |
| ||||||
E-CRISPR | http://www.e-crisp.org/E-CRISP/ | 1 | yes | yes | yes | [46] |
| ||||||
CHOPCHOP | http://chopchop.cbu.uib.no/ | 2 | no | yes | yes | [47, 48] |
| ||||||
ZiFiT | http://zifit.partners.org/ZiFiT/CSquare9Nuclease.aspx | 1 | yes | no | yes | [49] |
| ||||||
sgRNA Designer | https://portals.broadinstitute.org/gpp/public/analysis-tools/sgrna-design | 2 | no | yes | yes | [50, 51] |
| ||||||
CRISPRseek | http://bioconductor.org/packages/release/bioc/html/CRISPRseek.html | 1 | yes | yes | no | [52] |
| ||||||
CRISPR-Era | http://crispr-era.stanford.edu/ | 1 | yes | yes | no | [53] |
∗Supplementary file: workflow to design in silico gRNAs.