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Primer-probe sets used in this study.
| Target | Primers/Probes | Amplicon size (bp) |
|---|---|---|
| IS6110 (MULTICOPY) | ||
| ISL | CGCCGAGGCAGGCATCCAACC | 73 |
| GATCGTCTCGGCTAGTGCATT | ||
| FAM-CGGTCGGAAGCTCCTATGAC-TAMRA | ||
| ISM | GGCTGTGGGTAGCAGACCT | 77 |
| GTAGGCGTCGGTGACAAAG FAM- | ||
| GGGCAGGGTTCGCCTACGT-TAMRA | ||
| ISP | CATGTCCGGAGACTCCAGTT | 66 |
| GGTACCTCCTCGATGAACCA FAM- | ||
| AAAGGATGGGGTCATGTCAG-TAMRA | ||
| senX3 (single-copy) | CGCGGCTAATCACGACGGCACG | 164 |
| CTCTTCCTCTCGTTGTGACCTG | ||
| HEX-CCTATCACGACGACGAGCGACCCGA-BHQ-1 | ||
