Table 4.
Summary of isolate Bacillus megaterium SR7 functional genomic annotation (RAST).
| Sulfur metabolism | ||
|---|---|---|
| Sulfate reduction | Sulfate adenylyltransferase (sat) | |
| Sulfite reduction | Sulfite reductase alpha subunit (dsrA) | |
| Sulfite reductase beta subunit (dsrB) | ||
| Sulfite oxidation | Sulfite oxidase (yedY) | |
| Nitrogen metabolism | ||
| Nitrate reduction | Nitrate reductase alpha subunit (narG) | |
| Polyferredoxin quinol dehydrogenase (napH) | ||
| Nitrite reduction | Nitrite reductase (NADH) large subunit (nirB) | |
| Nitrite reductase (NADH) small subunit (nirD) | ||
| Denitrification | Nitric oxide reductase subunit D (norD) | |
| Nitric-oxide reductase (norQ) | ||
| Nitrogen fixation | Iron-sulfur cluster assembly scaffold protein (nifU) | |
| Metals/metalloids metabolism | ||
| As(V) reduction | Arsenate reductase (arsC/detoxification) | |
| Central carbon metabolism | ||
| Glycolysis/Entner-Doudoroff | 2-keto 3-deoxygluconate-6-phosphate (KDPG) aldolase (eda) | |
| TCA cycle | Citrate synthase, Isocitrate dehydrogenase, a-ketogluterate dehydrogenase | |
| Pentose phosphate | Transketolase; Ribulose-5-phsphate isomerase (rpi) | |
| CO2 <> carbonic acid | Carbonic anhydrase | |
| Fermentation end products | ||
| Butyric acid | Butyrate kinase | |
| Succinate | Fumarate reductase/succinate dehydrogenase | |
| Lactate | Lactate dehydrogenase | |
| Ethanol | Aldehyde-alcohol dehydrogenase (adhE) | |
| Butanol | Butanol dehydrogenases (bdhAD) | |
| Acetate | Phosphate acetyltransferase, acetate kinase | |
| 2,3-Butanediol | 2,3-butanediol dehydrogenase (budC), α-acetolactate decarboxylase | |
| Mixed acid general | Alcohol dehydrogenase, acetaldehyde dehydrogenase | |
| Physiology/environment/antibiotics | ||
| Sporulation | Sigma B Stress | tRNA Suite |
| Oxidative stress | Siderophore | Polyhydroxyalkanoate Metabolism |
| Osmotic stress | Motility | Bacitracin export (bceA) |
| Heat shock | Chemotaxis | Tetracycline resistance |
| Cold shock | Phage proteins | Chloramphenicol resistance |
| Carbon starvation | Twin-arginine translocation | Streptomycin biosynthesis |