Table 1. Assembly and gene prediction statistics for the Phytophthora cactorum genome, with reference to publically available Phytophthora spp. genomes from Clades 1, 2 and 7 [43].
Number of core eukaryotic genes (CEGs) identified as complete and present in a single copy are shown for each genome/set of gene models, as determined by BUSCO.
| Species | P. cactorum | P. parasitica | P. infestans | P. capsici | P. sojae |
|---|---|---|---|---|---|
| Phylogenetic Clade | 1a | 1b | 1c | 2 | 7 |
| Strain | 10300 | INRA-310 | T30-4 | LT1534 | P6497 |
| Assembly size (Mb) | 59.3 | 82.4 | 228.5 | 64 | 83 |
| Number of contigs | 4623 | 708 | 4921 | 917 | 83 |
| Number of contigs (>1 kb) | 2913 | 708 | 4598 | 917 | 83 |
| Largest contig (kb) | 301 | 4,724 | 6,928 | 2,170 | 13,391 |
| N50 (kb) | 56.3 | 888 | 1,589 | 706 | 7,609 |
| N's per 100 kb | 4006 | 34,613 | 16,806 | 12,466 | 3959 |
| Repeatmasked (Mb) | 10.8 (18%) | 7.0 (8%) | 152.1 (67%) | 13.6 (21%) | 23.7 (29%) |
| CEGs in the assembly | 274 (90%) | 271 (89%) | 255 (84%) | 269 (89%) | 270 (89%) |
| Predicted genes | 23,884 | 20,822 | 17,787 | 19,805 | 26,584 |
| CEGs in gene models | 272 (89%) | 271 (89%) | 257 (85%) | 261 (89%) | 262 (86%) |