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. 2018 Oct 2;13(10):e0202305. doi: 10.1371/journal.pone.0202305

Table 5. Phytophthora cactorum genes in orthogroups shared with characterized P. infestans RxLR candidates.

Orthogroup assignment shows conservation of these genes throughout Phytophthora spp. Numbers of genes in each orthogroup are shown for P. cactorum (Pcac), P. parasitica (Ppar), P. infestans (Pinf), P. capsici (Pcap) and P. sojae (Psoj).

P. cactorum
gene ID
Contig P. infestans
Avr gene
P. infestans
gene ID
Orthogroup Orthogroup contents Notes
g15126.t1 contig_485 Avr1 PITG_16663 OG0000777 Pcac(2):Pinf(2):Ppar(4):Pcap(4):Psoj(2) TLLR at RxLR motif location
g16706.t1 contig_608 Avr1 PITG_16663 OG0000777 Pcac(2):Pinf(2):Ppar(4):Pcap(4):Psoj(2)
g5545.t1 contig_94 Avr3b PITG_15732 OG0013112 Pcac(1):Pinf(1):Ppar(1):Pcap(0):Psoj(0) NUDIX hydrolase domain (IPR000086)
g4951.t1 contig_80 Avr4 PITG_07387 OG0011587 Pcac(1):Pinf(1):Ppar(2):Pcap(0):Psoj(0)
g6635.t1 contig_121 Avrblb1 PITG_21388 OG0001713 Pcac(2):Pinf(2):Ppar(4):Pcap(0):Psoj(0) Truncated protein
g6663.t1 contig_121 Avrblb1 PITG_21388 OG0001713 Pcac(2):Pinf(2):Ppar(4):Pcap(0):Psoj(0)
g15879.t1 contig_543 AvrSmira2 PITG_07558 OG0000427 Pcac(2):Pinf(4):Ppar(5):Pcap(3):Psoj(7)
g18867.t1 contig_844 AvrSmira2 PITG_07558 OG0000427 Pcac(2):Pinf(4):Ppar(5):Pcap(3):Psoj(7)