Table 6. Number of genes neighboring the start or end of 4,623 Phytophthora cactorum contigs by effector category.
| Total genes | Neighboring contig breaks | % neighboring contig breaks |
|
|---|---|---|---|
| All genes | 23884 | 5041 | 21.1 |
| RxLRs | 199 | 61 | 30.7 |
| CRNs | 76 | 39 | 51.3 |
| NLPs | 24 | 7 | 29.2 |
| Protease inhibitors (all) | 22 | 8 | 36.4 |
| Secreted CAZymes | 282 | 57 | 20.2 |
| Non-secreted CAZY | 410 | 61 | 14.9 |
| Elicitins | 47 | 10 | 21.3 |
| BUSCO genes | 272 | 16 | 5.9 |
The occurrence of genes neighboring contig breaks was not evenly distributed between gene categories (X2 = 104.23, df = 8, p < 0.01).