Table 2.
The functions, locations and abbreviations of DEGs.
| Name | Main functions | Locations | Abbreviations |
|---|---|---|---|
| Transporter | |||
| potassium transporting ATPase subunit B | potassium transport, this subunit is responsible for energy coupling to the transport system | integral component of membrane | kdpB |
| ferrichrome transporter ATP-binding protein FhuC | involved in iron(III) hydroxamate import, responsible for energy coupling to the transport system | peripheral proteins of the cytoplasmic membrane | FhuC |
| preprotein translocase subunit SecY | the central subunit of the protein translocation channel SecYEG | integral component of membrane | SecY |
| DL-methionine transporter subunit | involved in methionine import | integral component of membrane | metI |
| Lipid transporter ATP-binding/permease | involved in lipid A export and for biogenesis of the outer membrane | integral component of membrane | msbA |
| Phosphate ABC transporter substrate-binding protein | involved in phosphate import | integral component of membrane | pstS |
| Metabolism | |||
| succinyl-CoA synthetase, beta subunit | carbon metabolism, energy metabolism, citric acid cycle(TCA cycle) | in cytoplasm | sucC |
| trehalose-6-phosphate phosphatase | glucose metabolism, osmotic adaptation | unknown, perhaps in cytoplasm | otsB |
| alcohol dehydrogenase | energy metabolism, carbon fermentation | in cytoplasm | frmA |
| S-formylglutathione hydrolase | hydrolyzes S-formylglutathione to glutathione and formate | unknown, perhaps in cytoplasm | frmB/YeiG |
| LPS core phosphoethanolamine transferase | catalyzes the addition of a diphosphoethanolamine moiety to the outer membrane lipopolysaccharide core | integral component of membrane | eptC |
| soluble pyridine nucleotide transhydrogenase | pyridine nucleotide-disulfide oxidoreductase family protein, has an impact on the redox balance of cells | in cytoplasm | udhA/sthA |
| ethanolamine ammonia-lyase, large subunit | intracellular amino acid metabolism | unknown, perhaps in cytoplasm | eutB |
| chloramphenicol acetyltransferase | transport of small molecules | unknown, perhaps in cytoplasm | cat |
| 2-octaprenyl-6-methoxyphenyl hydroxylase | FAD/NAD(P)-binding protein | unknown, perhaps in cytoplasm | ubiH |
| DNA transcription and translation | |||
| 23S rRNA | ribosomal component, protein synthesis | in cytoplasm | 23S rRNA |
| 50S ribosomal protein L14 | ribosomal proteins, protein synthesis | in the ribosomal | rplN |
| lysine tRNA synthetase | tRNA synthesis, protein synthesis | in cytoplasm | lysS |
| histidyl-tRNA synthetase | tRNA synthesis, protein synthesis | in cytoplasm | hisS |
| 10saRNA | transcriptional regulator | in cytoplasm | 10SaRNA |
| lactose operon repressor | transcriptional regulator, repressor of the lactose operon | in cytoplasm | lacI |
| transcriptional regulator Cbl | HTH-type transcriptional regulator, transcriptional regulator of cysteine biosynthesis | in cytoplasm | cb1 |
| regulatory RNA CsrB | control bacterial gene expression post-transcriptionally | in cytoplasm | CsrB |
| phosphohistidine phosphatase | catalytic diphosphoric acid reaction | in cytoplasm | sixA |
| DNA-directed RNA polymerase, beta subunit | transcription | in cytoplasm | rpoB |
| 16S rRNA (cytosine(1402)-N(4)) -methyltransferase | catalyzes the N4-methylation of cytosine in 16sRNA | in cytoplasm | rsmH |
| coding tRNA between 16sRNA and 23sRNA | coding tRNA | in cytoplasm | tRNA |
| Protein besides sequences | |||
| phospholipase D family protein | related to the metabolism of phospholipids | unknown, perhaps in cytoplasm | phD |
| methylenetetrahydrofolate reductase | involved in the tetrahydrofolate pathway interconversion, which is part of one-carbon metabolism | in cytoplasm | metF |
| catalase/peroxidase HPI | bifunctional enzyme with both catalase and broad-spectrum peroxidase activity | unknown, perhaps in cytoplasm | katG |
| protein CsiD | combined with Fe2+ | unknown, perhaps in cytoplasm | csiD |
| SsrA-binding protein | binds to tmRNA, and required for rescue of stalled ribosomes | in cytoplasm | smpB |
| protein syd | interacts with the SecY protein in vivo | in membrane | syd |
| glycerate kinase 2 | glucose metabolism | unknown, perhaps in cytoplasm | gk2 |
| bacterial regulatory helix-turn-helix, lysR family protein | combine with DNA, regulated transcription | in cytoplasm | lysR |
| TonB-dependent siderophore receptor family protein | transport, related to siderophore transport | in outer membrane | TonB |
| serine protease sat autotransporter | has serine-type endopeptidase activity | in outer membrane | sat |
| citrate lyase acyl carrier protein | covalent carrier of the coenzyme of citrate lyase | in cytoplasm | citD |
| citrate (pro-3S)-lyase ligase | ligase | unknown, perhaps in cytoplasm | citC |