Table 2.
Potential candidate genes from the trichome shape QTL on chromosome I.
| Solyc ID | Annotation | LA1777 leaves | LA1777 trich. | LA4024 leaves | LA4024 trich. | Leaves/trich. LA1777a | Leaves/trich. LA4024a | 1777/4024b |
|---|---|---|---|---|---|---|---|---|
| 01g108530 | Acetyl esterase | 30,5 | 241,1 | 35,1 | 19,5 | −3,0 | 0,8 | 3,6 |
| 01g108550 | Unknown Protein | 10,5 | 76,8 | 4,8 | 7,2 | −2,9 | −0,6 | 3,4 |
| 01g111950 | Receptor-like kinase | 13,7 | 100,3 | 14,8 | 15,0 | −2,9 | 0,0 | 2,7 |
| 01g110340 | Endoglucanase 1 | 27,2 | 156,9 | 42,5 | 105,6 | −2,5 | −1,3 | 0,6 |
| 01g111350 | Nodulin family protein | 143,2 | 685,8 | 24,1 | 63,8 | −2,3 | −1,4 | 3,4 |
| 01g108670 | Kinesin-like protein | 7,1 | 32,3 | 8,1 | 8,6 | −2,2 | −0,1 | 1,9 |
| 01g108580 | Gibberellin receptor GID1L2 | 18,0 | 74,2 | 57,2 | 32,8 | −2,0 | 0,8 | 1,2 |
| 01g108100 | Unknown Protein | 15,6 | 60,7 | 8,3 | 10,6 | −2,0 | −0,3 | 2,5 |
| 01g107390 | Auxin-responsive GH3 product | 15,2 | 58,7 | 8,3 | 28,0 | −1,9 | −1,7 | 1,1 |
| 01g110290 | Squalene synthase | 400,3 | 1274,7 | 648,5 | 450,7 | −1,7 | 0,5 | 1,5 |
| 01g107920 | Os07g0175100 protein | 9,9 | 28,5 | 8,2 | 14,2 | −1,5 | −0,8 | 1,0 |
| 01g109300 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | 667,2 | 1834,1 | 863,1 | 1109,8 | −1,5 | −0,4 | 0,7 |
| 01g109980 | BEL1-like homeodomain protein 6 | 87,9 | 234,6 | 86,5 | 116,5 | −1,4 | −0,4 | 1,0 |
| 01g110460 | 3-oxo-5-alpha-steroid 4-dehydrogenase family protein | 13,7 | 35,1 | 12,0 | 7,0 | −1,4 | 0,8 | 2,3 |
| 01g107170 | Zinc finger protein | 26,9 | 66,0 | 29,5 | 39,1 | −1,3 | −0,4 | 0,8 |
| 01g111500 | MYB transcription factor | 38,4 | 92,9 | 36,8 | 67,2 | −1,3 | −0,9 | 0,5 |
| 01g108910 | At2g15890 | 183,9 | 433,5 | 12,4 | 43,6 | −1,2 | −1,8 | 3,3 |
| 01g111370 | Choline transporter like family | 136,1 | 319,6 | 70,4 | 98,6 | −1,2 | −0,5 | 1,7 |
| 01g107340 | Unknown protein | 44,4 | 101,3 | 43,5 | 45,5 | −1,2 | −0,1 | 1,2 |
| 01g110760 | Unknown protein | 9,7 | 20,6 | 12,0 | 14,7 | −1,1 | −0,3 | 0,5 |
| 01g108250 | Vacuolar import and degradation protein VID27 | 23,2 | 47,5 | 34,8 | 31,8 | −1,0 | 0,1 | 0,6 |
| 01g111080 | Gibberellin-regulated protein 2 | 12,0 | 24,5 | 13,0 | 22,2 | −1,0 | −0,8 | 0,1 |
| 01g107180 | Phototropic-responsive NPH3 family protein | 215,6 | 434,9 | 171,3 | 61,3 | −1,0 | 1,5 | 2,8 |
The values in columns 3–6 are normalized fluorescence data from transcriptome microarray published by Balcke et al. (2017). alog2 fold-change between leaves and trichomes in S. habrochaites LA1777 (column 7) and S. lycopersicum (column 8). blog2 fold change of the expression in trichomes of S. habrochaites compared to the expression in trichomes of S. lycopersicum.