Table 2. Lone sites by super population and their imputation accuracy for a one million site scaffold.
| Population | Number of Individuals | Number of Lone Sites | Imputation Accuracy Quality | Number Unrecoverable with r2acc ≥ 0.2 (%) | ||
|---|---|---|---|---|---|---|
| r2acc ≥ 0.2 | r2acc ≥ 0.5 | r2acc ≥ 0.8 | ||||
| AAC | 156 | 7,509 | 90.79% | 80.72% | 51.72% | 691 (9.2%) |
| AFR | 495 | 4,497 | 63.29% | 38.73% | 7.03% | 1,651 (36.7%) |
| AMR | 341 | 2,701 | 48.98% | 25.88% | 3.78% | 1,378 (51.02%) |
| EAS | 503 | 4,947 | 44.37% | 12.41% | 2.14% | 2,752 (55.63%) |
| EUR | 501 | 3,881 | 51.07% | 23.22% | 3.74% | 1,899 (48.93%) |
| SAS | 477 | 4,293 | 51.01% | 18.77% | 2.26% | 2,103 (48.99%) |