Table 3. Coverage of 1 million and 500,000 tag SNP set by super population for all polymorphic sites on chromosome 9 with MAF > 0.5%.
| Super population | Total Number of Polymorphic Sites | Scaffold of 1,000,000 tags | Scaffold of 500,000 tags | ||||
|---|---|---|---|---|---|---|---|
| Coverage | Imputation Accuracy | Coverage | Imputation Accuracy | ||||
| r2 > 0.5 | r2 > 0.8 | r2 > 0.5 | r2 > 0.8 | ||||
| AAC | 780896 | 63.64% | 30.27% | 90.59% | 34.03% | 14.07% | 84.85% |
| AFR | 777207 | 59.15% | 28.05% | 89.62% | 33.17% | 14.10% | 83.32% |
| AMR | 503804 | 79.90% | 53.60% | 92.77% | 61.00% | 37.02% | 90.09% |
| EAS | 367189 | 76.95% | 63.08% | 86.28% | 73.16% | 55.09% | 84.16% |
| EUR | 414184 | 78.77% | 62.65% | 91.02% | 72.87% | 52.86% | 88.90% |
| SAS | 455573 | 74.84% | 56.97% | 88.09% | 67.28% | 45.91% | 85.46% |