Table 5. Significant marker-trait associations (MTAs) in the potato GWAS panel.
| Trait | Markera | Chr | Position (bp) | GWAS model | Thresholdb | -log10(p) |
|---|---|---|---|---|---|---|
| Eye Depth | solcap_snp_c1_8019 | 10 | 48863165 | K, QK | 5 | 13.15, 13.54 |
| Flesh Color | solcap_snp_c2_20285 | 3 | 49393382 | K, QK | 5 | 8.67, 7.84 |
| Foliage | solcap_snp_c2_50302 | 5 | 5055763 | K, QK | 5 | 7.38, 6.54 |
| Plant Height | solcap_snp_c2_50302 | 5 | 5055763 | K | 5 | 5.3 |
| Stolon Attachment | solcap_snp_c2_50302 | 5 | 5055763 | K, QK | 5 | 6.02, 5.39 |
| solcap_snp_c1_14802 | 5 | 5051766 | K, QK | 5 | 5.35, 5.44 | |
| Tuber Shape | solcap_snp_c1_8019 | 10 | 48863165 | K, QK | 5 | 14.7, 13.85 |
a
Only most significant MTAs are shown; where K and QK did not detect the same SNP as the most significant MTA, the top most MTAs from both models are included.
b
p-value significance threshold according to Bonferroni correction at 5% genome-wide false positive rate.