Table 1.
Patient | 1_II.11 |
1_III.1 0 |
2_II.5 |
2_II.6 |
2_III.6 |
2_III.7 |
3_II.1 |
3_II.2 |
||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Type of variant | SNV | Indel | SNV | Indel | SNV | Indel | SNV | Indel | SNV | Indel | SNV | Indel | SNV | Indel | SNV | Indel |
Total number of variants | 49953 | 7942 | 49610 | 7948 | 49531 | 7991 | 48192 | 7593 | 50611 | 8083 | 50284 | 7942 | 50070 | 7963 | 50544 | 8006 |
Variants with an allele frequency <1% | 1782 | 590 | 1732 | 588 | 1761 | 615 | 1897 | 628 | 2065 | 671 | 2223 | 649 | 2100 | 626 | 1880 | 600 |
Exclusion of 5′UTR, 3′UTR and intron locations without local splice effect prediction | 954 | 69 | 917 | 77 | 986 | 79 | 1076 | 79 | 1189 | 91 | 1240 | 75 | 1145 | 97 | 1011 | 87 |
Exclusion of synonymous variants without local splice effect prediction | 706 | 64 | 679 | 70 | 696 | 75 | 781 | 73 | 839 | 87 | 887 | 69 | 840 | 94 | 716 | 82 |
Variants consistent with dominant transmission | 1 heterozygous variant in CACNA1S |
One heterozygous variant common to all the affected patients (1_III.10, 2_II.5, 2_III.6, 2_III.7, 3_II.1, and 3_II.2) in the genes CACNA1S, was selected for further investigation after exclusion of mutations located in the 5′UTR, 3′UTR, intron, along with synonymous variants without predicted splicing effects.