Table 3.
SNP | Chromosome Position | Region | Allelesa | MAFb | Call Ratec (%) | HWE p value |
---|---|---|---|---|---|---|
rs9563084 | 13: 52585993 | Near 5UTR | G:A | 0.486 | 95.9 | 0.012 |
rs2277448 | 13: 52585548 | 5 UTR | G:T | 0.407 | 94.6 | 0.053 |
rs73184328 | 13: 52570395 | Intron 1 | A:G | 0.290 | 96.6 | 0.687 |
rs1801243 | 13: 52548140 | Exon 2 | A:C | 0.461 | 95.3 | 0.091 |
rs1801244 | 13: 52544805 | Exon 3 | G:C | 0.493 | 95.3 | 0.613 |
rs2147363 | 13: 52542796 | Intron 3 | G:T | 0.489 | 95.3 | 0.736 |
rs9526814 | 13: 52539526 | Intron 4 | G:T | 0.358 | 100.0 | 0.155 |
rs1061472 | 13: 52524488 | Exon 10 | C:T | 0.393 | 94.6 | 0.723 |
rs732774 | 13: 52523808 | Exon 12 | T:C | 0.377 | 98.6 | 0.601 |
rs1801249 | 13: 52515354 | Exon 16 | G:A | 0.392 | 97.3 | 0.730 |
rs2282057 | 13: 52511606 | Intron 18 | A:G | 0.407 | 91.2 | 0.477 |
rs1051332 | 13: 52507720 | 3UTR | T:C | 0.323 | 97.3 | 0.849 |
rs928169 | 13: 52507110 | 3UTR | C:G | 0.388 | 93.9 | 0.592 |
rs9535793 | 13: 52506762 | Near 3UTR | G:A | 0.403 | 97.3 | 0.730 |
rs2031992 | 13: 52506372 | Near 3UTR | C:T | 0.330 | 99.3 | 0.852 |
a Minor : major
b MAF= minor allele frequency
c Numbers may not add up to 100% of available subjects because of missing genotyping data.