Table 2.
Spoligotyping results of the 180 samples with interpretable results
| Lineage (n, %a) | Sublineage (n, %a) | SIT | n (%a) |
|---|---|---|---|
| L4 (n=164, 91.1%) | L4.6.2/Cameroon (n=120, 66.7%) | 61 | 108 (60) |
| 852 | 6 (3.3) | ||
| Orphan | 3 (1.7) | ||
| 403 | 2 (1.1) | ||
| 838 | 1 (0.6) | ||
| L4/T2/UgandaI (n=12, 6.7%) | 316 | 5 (2.8) | |
| 2088 | 5 (2.8) | ||
| 848 | 2 (1.1) | ||
| L4/T1 (n=6, 3.3%) | 53 | 2 (1.1) | |
| Orphan | 2 (1.1) | ||
| 804 | 1 (0.6) | ||
| 1580 | 1 (0.6) | ||
| L4.1.1/X (n=4, 2.2%) | 200 | 4 (2.2) | |
| L4.1.2/Haarlem (n=2, 1.1%) | 49 | 1 (0.6) | |
| 1652 | 1 (0.6) | ||
| L4.3.2/LAM3 (n=1, 0.6%) | 2428 | 1 (0.6) | |
| L4/not assigned (n=19, 10.6%) | NEW-3 | 3 (1.7) | |
| 1204 | 2 (1.1) | ||
| NEW-1 | 2 (1.1) | ||
| NEW-2 | 2 (1.1) | ||
| 233 | 1 (0.6) | ||
| 1872 | 1 (0.6) | ||
| Orphan | 1 (0.6) | ||
| 7 Different patterns not described in SITVITWEB | 1 (0.6) | ||
| L5 (n=13, 62.8%) | L5/afri/WA1 (n=13, 7.2%) | Orphan | 4 (2.2) |
| 331 | 3 (1.7) | ||
| 1592 | 1 (0.6) | ||
| 5 Different patterns not described in SITVITWEB | 1 (0.6) | ||
| L2 (n=2, 1.1%) | L2/Beijing (n=2, 1.1%) | 269 | 2 (1.1) |
| L6 (n=1, 0.6%) | L6/afri/WA2 (n=1, 0.6%) | 326 | 1 (0.6) |
Note:
a
Among the 180 samples.
Abbreviations: SIT, spoligotyping international type; LAM, Latin American-Mediterranean; afri, Mycobacterium africanum; WA, West African; Orphan, pattern described in SITVITWEB but without SIT number assigned.