Table 5.
Contiguity for benchmark, random, and contamination sets
| Benchmark set | |||
| N50 measure | SKESA | SPAdes | MegaHit |
| <=10 Kb | 14 | 69 | 19 |
| 10001−50 Kb | 40 | 41 | 46 |
| 50001−100 Kb | 41 | 56 | 67 |
| 100001−250 Kb | 191 | 169 | 197 |
| 250001−500 Kb | 77 | 43 | 48 |
| > 500 Kb | 18 | 3 | 4 |
| Median | 170,647 | 117,340 | 124,833 |
| Minimum | 1832 | 364 | 687 |
| Maximum | 1,197,860 | 622,367 | 617,087 |
| Average | 195,141 | 131,823 | 146,706 |
| N50 statistic in contamination set | |||
| Contamination | SKESA | SPAdes | MegaHit |
| None | 282,763 | 260,531 | 202,384 |
| 3x | 282,763 | 260,531 | 202,384 |
| 6x | 282,763 | 260,532 | 202,384 |
| 9x | 225,630 | 260,531 | 151,916 |
| 12x | 77,455 | 260,531 | 107,175 |
| 15x | 42,440 | 260,531 | 65,124 |
| Random set | |||
| N50 measure | SKESA | SPAdes | MegaHit |
| <=10 Kb | 6 | 10 | 6 |
| 10001−50 Kb | 349 | 206 | 285 |
| 50001−100 Kb | 788 | 409 | 1516 |
| 100001−250 Kb | 2307 | 2369 | 2889 |
| 250001−500 Kb | 1324 | 1616 | 266 |
| > 500 Kb | 226 | 390 | 38 |
| Median | 170,877 | 208,907 | 117,074 |
| Minimum | 2414 | 209 | 4182 |
| Maximum | 1,545,488 | 1,530,182 | 1,499,532 |
| Average | 213,847 | 255,079 | 136,339 |