Table 6.
Runs and species for testing running time performance
| SRA run | Species |
|---|---|
| SRR2820668 | Achromobacter xylosoxidans |
| SRR2822445 | Achromobacter xylosoxidans |
| SRR2821368 | Achromobacter xylosoxidans |
| SRR2821369 | Achromobacter xylosoxidans |
| SRR2823707 | Bartonella bacilliformis |
| SRR2823715 | Bordetella bronchiseptica |
| SRR2823716 | Bordetella bronchiseptica |
| SRR2824043 | Bordetella pertussis |
| SRR2822462 | Citrobacter amalonaticus |
| SRR2818794 | Citrobacter amalonaticus |
| SRR1284629 | Citrobacter freundii |
| SRR2821773 | Citrobacter sp. |
| SRR1515967 | Enterobacter cloacae |
| SRR1576778 | Enterobacter cloacae complex |
| SRR1576808 | Enterobacter cloacae complex |
| SRR2822449 | Enterococcus sp. |
| ERR008613 | Escherichia coli |
| ERR022075 | Escherichia coli |
| SRR530851 | Escherichia coli |
| SRR587217 | Escherichia coli |
| SRR2817810 | Grimontia hollisae |
| SRR2817811 | Grimontia hollisae |
| SRR2822309 | Hafnia alvei |
| ERR351267 | Helicobacter pylori |
| SRR2821438 | Klebsiella aerogenes |
| SRR2820617 | Klebsiella aerogenes |
| SRR2820618 | Klebsiella aerogenes |
| SRR1501122 | Klebsiella oxytoca |
| SRR1427234 | Klebsiella pneumoniae |
| SRR1505904 | Klebsiella pneumoniae |
| SRR1427243 | Klebsiella pneumoniae |
| SRR1501128 | Klebsiella pneumoniae |
| SRR1510963 | Klebsiella pneumoniae |
| SRR941212 | Mannheimia haemolytica |
| SRR2823701 | Morganella morganii |
| SRR2822442 | Pantoea agglomerans |
| SRR2820663 | Providencia stuartii |
| SRR498276 | Salmonella enterica |
| SRR2814419 | Salmonella enterica |
| SRR2814420 | Salmonella enterica |
| SRR2819198 | Serratia liquefaciens |
| SRR2812569 | Shigella sonnei |
| SRR2812570 | Shigella sonnei |
| SRR1206476 | Staphylococcus aureus |
| SRR2822404 | Staphylococcus aureus |
| SRR2820641 | Staphylococcus lugdunensis |
| SRR2820657 | Staphylococcus lugdunensis |
| SRR2822469 | Staphylococcus saprophyticus |
| SRR2820294 | Staphylococcus saprophyticus |
| SRR2819094 | Staphylococcus simulans |
| SRR2820674 | Streptococcus pyogenes |
| SRR2815879 | Vibrio fluvialis |
| SRR2817447 | Vibrio harveyi |
| SRR2818033 | Vibrio mimicus |
| SRR2818092 | Vibrio parahaemolyticus |
| SRR2818127 | Vibrio vulnificus |