Table 2.
Repeat content in the genome of O. longistaminata and five selected rice species.
| Species | Genome size (Mb) | Total repeat size (Mb) [% of total sequence] | Retroelements (Mb) [% of total sequence] | DNA transposons (Mb) [% of total sequence] |
|---|---|---|---|---|
| Oryza longistaminata | 350.6 | 133.9 [38.10%] | 53.1 [15.11%] | 59.1 [16.83%] |
| Oryza barthii | 308.3 | 110.3 [36.08%] | 49.4 [16.15%] | 48 [15.68%] |
| Oryza brachyantha | 260.8 | 53.3 [21.92%] | 18 [7.38%] | 31.8 [13.08%] |
| Oryza glabberima | 316.4 | 117.2 [38.65%] | 58 [19.13%] | 47.7 [15.71%] |
| Oryza sativa ssp. indica | 427.0 | 184.5 [44.91%] | 106.9 [26.03%] | 61.9 [15.08%] |
| Oryza sativa ssp. japonica | 373.2 | 171.1 [45.87%] | 93 [24.93%] | 63 [16.88%] |
The O. longistaminata genome and five other selected rice species were analyzed by RepeatMasker and values shown were taken directly from the .tbl file. The O. longistaminata genome used here included the unmapped contigs