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. Author manuscript; available in PMC: 2018 Oct 8.
Published in final edited form as: Cell Rep. 2018 Sep 4;24(10):2723–2732.e4. doi: 10.1016/j.celrep.2018.08.009
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
ADI-15878 (Bornholdt et al., 2016b);
Mapp Biopharmaceutical
N/A
ADI-16061 (Bornholdt et al., 2016b);
Mapp Biopharmaceutical
N/A
c13C6 Mapp Biopharmaceutical N/A
BDBV289 (Flyak et al., 2016); J.E. Crowe N/A

Chemicals, Peptides, and Recombinant Proteins
FreeStyle 293 expression medium Thermo Fisher Cat no. 12338018
ExpiCHO expression medium Thermo Fisher Cat no. A2910001
ExpiCHO feed Thermo Fisher Cat no. A2910002
Opti-MEM Thermo Fisher Cat no. 31985070
EBOV GPΔMuc-Makona variant This study N/A
BDBV GPΔMuc This study N/A
n-Dodecyl-beta-Maltoside Anatrace Part no. D310S
A8–35 amphipole Anatrace Part no. A835

Deposited Data
ADI-15878 Fab complex with EBOV
GPΔMuc-Makona variant cryo-EM map
This paper EMDB; EMD-8935
ADI-15878 Fab complex with BDBV
GPΔMuc variant cryo-EM map
This paper EMDB; EMD-8936
ADI-15878 Fab complex with EBOV
GPΔMuc-Makona variant model
This paper PDB; 6DZL
ADI-15878 Fab complex with BDBV
GPΔMuc model
This paper PDB; 6DZM
Unliganded ADI-15878 Fab crystal structure This paper PDB; 6DZN

Experimental Models: Cell Lines
293-FreeStyle Thermo Fisher R79007
ExpiCHO Thermo Fisher A29127

Oligonucleotides
pPPI4 Sequencing primer For:
AGCGGCAGAAGAAGATGCAGGCAGC
This study N/A
BGH_Rev Sequencing primer:
CCTCGACTGTGCCTTCTA
Eton Bioscience N/A
AbVec Sequencing primer For:
AGTCTATAGGCCCACCCCCT
This study N/A
AbVec Sequencing primer Rev:
AACCATTATAAGCTGCAATAAACAA
This study N/A

Recombinant DNA
pPPI4-EBOV GPΔMuc Makona variant-Ek-ddStrep This study N/A
pPPI4-BDBV GPΔMuc-Ek-ddStrep This study N/A
AbVec-ADI-15878 HC Fab This study N/A
AbVec-ADI-16061 HC Fab This study N/A
AbVec-BDBV289 HC Fab This study N/A
AbVec-ADI-15878 LC This study N/A
AbVec-ADI-16061 LC This study N/A
AbVec-BDBV289 LC This study N/A

Software and Algorithms
COOT Emsley et al., 2010 http://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot
Phenix Adams et al., 2010 https://www.phenix-online.org
HKL2000 Otwinowski and Minor, 1997 http://www.hkl-xray.com/
MotionCor2 Zheng et al., 2017 http://msg.ucsf.edu/em/software/motioncor2.html
GCTF Zhang, 2016
DoG Picker Voss et al., 2009 http://emg.nysbc.org/redmine/projects/software/wiki/DoGpicker
Relion 2.0 Scheres, 2012 http://www2.mrc-lmb.cam.ac.uk/relion/index.php?title=Main_Page
UCSF Chimera Pettersen et al., 2004 https://www.cgl.ucsf.edu/chimera/
Rosetta DiMaio et al., 2015 https://www.rosettacommons.org/
Swiss Modeler Biasini et al., 2014 https://swissmodel.expasy.org/
Phaser McCoy et al., 2007 http://www.ccp4.ac.uk/html/phaser.html
BUSTER Bricogne et al., 2017 https://www.globalphasing.com/buster/
Refmac5 Murshudov et al., 2011 http://www.ccp4.ac.uk/html/refmac5.html
EMRinger Barad et al., 2015 http://emringer.com
Molprobity Chen et al., 2010 http://molprobity.biochem.duke.edu
PDBcare Lütteke and von der Lieth, 2004 www.glycosciences.de/tools/pdb-care/
Privateer Agirre et al., 2015 www.ccp4.ac.uk/html/privateer.html

Other
Titan Krios 300kV electron microscope Thermo Fisher https://www.fei.com/
Talos Arctica 200kV electron microscope Thermo Fisher https://www.fei.com/
K2 Summit camera Gatan http://www.gatan.com
Vitrobot Thermo Fisher https://www.fei.com/
Gatan Solarus 950 Plasma system Gatan http://www.gatan.com