REAGENT or RESOURCE | SOURCE | IDENTIFIER |
Antibodies | ||
ADI-15878 | (Bornholdt et al., 2016b); Mapp Biopharmaceutical |
N/A |
ADI-16061 | (Bornholdt et al., 2016b); Mapp Biopharmaceutical |
N/A |
c13C6 | Mapp Biopharmaceutical | N/A |
BDBV289 | (Flyak et al., 2016); J.E. Crowe | N/A |
Chemicals, Peptides, and Recombinant Proteins | ||
FreeStyle 293 expression medium | Thermo Fisher | Cat no. 12338018 |
ExpiCHO expression medium | Thermo Fisher | Cat no. A2910001 |
ExpiCHO feed | Thermo Fisher | Cat no. A2910002 |
Opti-MEM | Thermo Fisher | Cat no. 31985070 |
EBOV GPΔMuc-Makona variant | This study | N/A |
BDBV GPΔMuc | This study | N/A |
n-Dodecyl-beta-Maltoside | Anatrace | Part no. D310S |
A8–35 amphipole | Anatrace | Part no. A835 |
Deposited Data | ||
ADI-15878 Fab complex with EBOV GPΔMuc-Makona variant cryo-EM map |
This paper | EMDB; EMD-8935 |
ADI-15878 Fab complex with BDBV GPΔMuc variant cryo-EM map |
This paper | EMDB; EMD-8936 |
ADI-15878 Fab complex with EBOV GPΔMuc-Makona variant model |
This paper | PDB; 6DZL |
ADI-15878 Fab complex with BDBV GPΔMuc model |
This paper | PDB; 6DZM |
Unliganded ADI-15878 Fab crystal structure | This paper | PDB; 6DZN |
Experimental Models: Cell Lines | ||
293-FreeStyle | Thermo Fisher | R79007 |
ExpiCHO | Thermo Fisher | A29127 |
Oligonucleotides | ||
pPPI4 Sequencing primer For: AGCGGCAGAAGAAGATGCAGGCAGC |
This study | N/A |
BGH_Rev Sequencing primer: CCTCGACTGTGCCTTCTA |
Eton Bioscience | N/A |
AbVec Sequencing primer For: AGTCTATAGGCCCACCCCCT |
This study | N/A |
AbVec Sequencing primer Rev: AACCATTATAAGCTGCAATAAACAA |
This study | N/A |
Recombinant DNA | ||
pPPI4-EBOV GPΔMuc Makona variant-Ek-ddStrep | This study | N/A |
pPPI4-BDBV GPΔMuc-Ek-ddStrep | This study | N/A |
AbVec-ADI-15878 HC Fab | This study | N/A |
AbVec-ADI-16061 HC Fab | This study | N/A |
AbVec-BDBV289 HC Fab | This study | N/A |
AbVec-ADI-15878 LC | This study | N/A |
AbVec-ADI-16061 LC | This study | N/A |
AbVec-BDBV289 LC | This study | N/A |
Software and Algorithms | ||
COOT | Emsley et al., 2010 | http://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot |
Phenix | Adams et al., 2010 | https://www.phenix-online.org |
HKL2000 | Otwinowski and Minor, 1997 | http://www.hkl-xray.com/ |
MotionCor2 | Zheng et al., 2017 | http://msg.ucsf.edu/em/software/motioncor2.html |
GCTF | Zhang, 2016 | |
DoG Picker | Voss et al., 2009 | http://emg.nysbc.org/redmine/projects/software/wiki/DoGpicker |
Relion 2.0 | Scheres, 2012 | http://www2.mrc-lmb.cam.ac.uk/relion/index.php?title=Main_Page |
UCSF Chimera | Pettersen et al., 2004 | https://www.cgl.ucsf.edu/chimera/ |
Rosetta | DiMaio et al., 2015 | https://www.rosettacommons.org/ |
Swiss Modeler | Biasini et al., 2014 | https://swissmodel.expasy.org/ |
Phaser | McCoy et al., 2007 | http://www.ccp4.ac.uk/html/phaser.html |
BUSTER | Bricogne et al., 2017 | https://www.globalphasing.com/buster/ |
Refmac5 | Murshudov et al., 2011 | http://www.ccp4.ac.uk/html/refmac5.html |
EMRinger | Barad et al., 2015 | http://emringer.com |
Molprobity | Chen et al., 2010 | http://molprobity.biochem.duke.edu |
PDBcare | Lütteke and von der Lieth, 2004 | www.glycosciences.de/tools/pdb-care/ |
Privateer | Agirre et al., 2015 | www.ccp4.ac.uk/html/privateer.html |
Other | ||
Titan Krios 300kV electron microscope | Thermo Fisher | https://www.fei.com/ |
Talos Arctica 200kV electron microscope | Thermo Fisher | https://www.fei.com/ |
K2 Summit camera | Gatan | http://www.gatan.com |
Vitrobot | Thermo Fisher | https://www.fei.com/ |
Gatan Solarus 950 Plasma system | Gatan | http://www.gatan.com |