Table 2.
Genes up‐regulated in individual clusters
| Symbol | Diff Score | Definition |
|---|---|---|
| Cluster A | ||
| BCAS2 | 22,57 | Homo sapiens breast carcinoma amplified sequence 2, mRNA |
| RPS6KA6 | 15,18 | Homo sapiens ribosomal protein S6 kinase, 90 kDa, polypeptide 6, mRNA |
| RBX1 | 13,5 | Homo sapiens ringbox 1, mRNA |
| FAM155A | 13,2 | Homo sapiens family with sequence similarity 155, member A, mRNA |
| Cluster B (first 20 genes with highest Diff Scores listed here, the entire list is given in the Supporting information, Table S2) | ||
| RAB33B | 64,25 | Homo sapiens RAB33B, member RAS oncogene family, mRNA |
| RAX2 | 64,25 | Homo sapiens retina and anterior neural fold homeobox 2, mRNA |
| EIF2AK4 | 54,75 | Homo sapiens eukaryotic translation initiation factor 2 alpha kinase 4, mRNA |
| RBM25 | 51,91 | Homo sapiens RNA binding motif protein 25, mRNA |
| ZNF358 | 51,62 | Homo sapiens zinc finger protein 358, mRNA |
| ACTR1A | 49,43 | Homo sapiens ARP1 actin‐related protein 1 homolog A, mRNA |
| SCG5 | 49,18 | Homo sapiens secretogranin V (7B2 protein), mRNA |
| NT5C2 | 48,13 | Homo sapiens 5′‐nucleotidase, cytosolic II, mRNA |
| BTBD2 | 47,99 | Homo sapiens BTB (POZ) domain containing 2, mRNA |
| TNPO2 | 46,04 | Homo sapiens transportin 2, mRNA |
| UBXN2A | 45,06 | Homo sapiens UBX domain protein 2A, mRNA |
| SH3YL1 | 43,87 | Homo sapiens SH3 and SYLF domain containing 1 (SH3YL1), mRNA |
| HNRNPUL2 | 43,84 | Homo sapiens heterogeneous nuclear ribonucleoprotein U‐like 2, mRNA |
| HARS2 | 43,51 | Homo sapiens histidyl‐tRNA synthetase 2, mitochondrial, mRNA |
| DARS | 43,26 | Homo sapiens aspartyl‐tRNA synthetase, mRNA |
| RNGTT | 43,15 | Homo sapiens RNA guanylyltransferase and 5′‐phosphatase, mRNA |
| NDUFS8 | 42,47 | Homo sapiens NADH dehydrogenase (ubiquinone) Fe‐S protein 8, 23 kDa (NADH‐coenzyme Q reductase), mRNA |
| THBS3 | 42,47 | Homo sapiens thrombospondin 3, mRNA |
| FOXO4 | 41,59 | Homo sapiens forkhead box O4 (FOXO4), mRNA |
| GCN1 | 41,08 | Homo sapiens eIF2 alpha kinase activator homolog, also known as general control of amino‐acid synthesis 1‐like 1 (GCN1L1), mRNA |
| Cluster C | ||
| SNX29P1 | 15,12 | Homo sapiens sorting nexin 29 pseudogene 1, also known as RUN domain containing 2B, mRNA (RUNDC2B) |
| IGFBP5 | 14,78 | Homo sapiens insulin‐like growth factor binding protein 5, mRNA |
| PLD2 | 14,78 | Homo sapiens phospholipase D2, mRNA |
| SNORA54 | 14,34 | Homo sapiens small nucleolar RNA, H/ACA box 54, small nucleolar RNA |
| SNORD1141 | 14,30 | Homo sapiens small nucleolar RNA, C/D box 114‐1, small nucleolar RNA |
| ACIN1 | 14,28 | Homo sapiens apoptotic chromatin condensation inducer 1, mRNA |
| SNORA10 | 14,18 | Homo sapiens small nucleolar RNA, H/ACA box 10, small nucleolar RNA |
| SNORD104 | 14,05 | Homo sapiens small nucleolar RNA, C/D box 104, small nucleolar RNA |
| SNORD41 | 13,86 | Homo sapiens small nucleolar RNA, C/D box 41, small nuclear RNA |
| SNORA73B | 13,74 | Homo sapiens RNA, U105A small nucleolar, small nucleolar RNA a.k.a RNU105A |
| CALCOCO1 | 13,71 | Homo sapiens calcium binding and coiled‐coil domain 1, mRNA |
| SCAF1 | 13,69 | Homo sapiens SR‐related CTD‐associated factor 1, mRNA |
| SNORA64 | 13,65 | Homo sapiens small nucleolar RNA, H/ACA box 64, small nucleolar RNA |
| CAMTA2 | 13,49 | Homo sapiens calmodulin binding transcription activator 2, mRNA |
| SNORA73B | 13,45 | Homo sapiens small nucleolar RNA, H/ACA box 73B, small nucleolar RNA |
| ARSG | 13,42 | Homo sapiens arylsulfatase G, mRNA |
| SNORA32 | 13,36 | Homo sapiens small nucleolar RNA, H/ACA box 32, small nucleolar RNA |
| RNU5A | 13,31 | Homo sapiens RNA, U5A small nuclear, small nuclear RNA |
| SNORD12 | 13,30 | Homo sapiens small nucleolar RNA, C/D box 12, small nucleolar RNA |
| RNU1G2 | 13,24 | Homo sapiens RNA, U1G2 small nuclear, small nuclear RNA |
| PPID | 13,23 | Homo sapiens peptidylprolyl isomerase D, mRNA |
| SNORD3D | 13,19 | Homo sapiens small nucleolar RNA, C/D box 3D, small nucleolar RNA |
| SNORD33 | 13,16 | Homo sapiens small nucleolar RNA, C/D box 33, small nucleolar RNA |
| SNORD68 | 13,14 | Homo sapiens small nucleolar RNA, C/D box 68, small nucleolar RNA |
| SNORD110 | 13,11 | Homo sapiens small nucleolar RNA, C/D box 110, small nucleolar RNA |
| SCARNA3 | 13,05 | Homo sapiens small Cajal body‐specific RNA 3, guide RNA |
| KMT5A | 13,05 | Homo sapiens lysine methyltransferase 5A, also known as SET domain containing 8 (SETD8), mRNA |
| SNORD66 | 13,02 | Homo sapiens small nucleolar RNA, C/D box 66, small nucleolar RNA |
| SNORA71A | 13,01 | Homo sapiens small nucleolar RNA, H/ACA box 71A, small nucleolar RNA |