Table 1.
Conformational method | Fractional factorial design (FFD) cycle | Comment FFD2 (LV2) | ||||||||
---|---|---|---|---|---|---|---|---|---|---|
Complete variable | FFD1 | FFD2 | ||||||||
r2 | SDEP | r2 | SDEP | r2 | SDEP | |||||
Minimum energy conformation | 0.38 | 0.51 | 1.09 | 0.45 | 0.56 | 1.09 | 0.45 | 0.56 | 1.09 | Non-consistent with respect to auto and cross-correlogram |
Stochastic search conformation | 0.34 | 0.45 | 1.08 | 0.42 | 0.51 | 1.01 | 0.46 | 0.53 | 0.91 | Non-consistent with respect to auto and cross-correlogram |
Docking conformations | 0.32 | 0.46 | 1.12 | 0.39 | 0.51 | 1.08 | 0.47 | 0.56 | 1.41 | Non-consistent with respect to auto and cross-correlogram |
Standard 3D conformations | 0.54 | 0.62 | 0.94 | 0.61 | 0.67 | 0.86 | 0.63 | 0.69 | 0.84 | Consistent with respect to TIP-TIP, DRY-TIP, and N1-N1 correlogram (Figure 6) |
The bold number represents finally selected model.