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. 2018 Mar 2;33(1):44–58. doi: 10.1007/s12250-018-0011-8

Table 4.

Identities of complete genome and ORFs between RdHEVEm and representative orthohepevirus reference strains

Hepeviridae Degree of identity (%)
Full genome ORF1 ORF2 ORF3
nt nt aa nt aa nt aa
Orthohepevirus A HEV-1 50.7–51.0 49.9–50.1 46.9–47.6 55.2–55.3 53.6 40.2–40.7 20.9–23.3
HEV-2 50.3–50.7 50.0–50.2 47.2–48.2 54.0–54.2 52.6 38.3–38.8 19.4–20.9
HEV-3 50.4 50.1 47.2–48.2 55.4 52.6–52.7 40.5–40.8 20.3–22.7
HEV-4 50.0 49.9–50.0 47.2–48.1 54.5–54.9 51.2–51.4 38.8–39.4 23.3–24.0
HEV-5 50.8–51.0 50.3 47.0–47.8 55.0 52.8–52.9 40.3–40.5 19.7–20.5
HEV-6 50.0–50.5 49.9–50.0 47.7–48.5 54.0–54.5 53.5 41.1 20.5–22.0
HEV-7 50.8–51.2 50.4–51.0 47.6–48.4 54.5–54.8 54.5–54.7 41.6–42.7 20.3–21.1
Orthohepevirus B 44.8–45.0 46.5–46.6 40.7–41.5 45.4–45.5 40.1 23.2–23.8 11.6–12.4
Orthohepevirus C HEV-C1 55.9–56.8 52.4–54.1 52.4–53.5 60.5–61.8 61.1–62.8 42.3–47.9 22.3–24.8
HEV-C2 55.1–56.1 53.5–54.2 52.8–54.3 57.8–59.7 58.4–58.8 45.7–46.3 22.0–26.3
RdHEVAc 56.4–56.8 52.4–52.7 51.6–53.4 61.2–62.0 62.2–62.8 45.5–45.8 23.5–25.2
Orthohepevirus D 46.7–46.9 47.7–47.9 41.2–41.8 48.0–48.2 44.1–44.2 27.7–27.9 17.1
Piscihepevirus A 34.6–35.0 36.1–36.4 24.5–24.9 30.7–30.9 16.7 17.5–17.9 11.4

The sequences were aligned using MAFFT. The evolutionary analyses were conducted using MEGA version 7. The GenBank Accession numbers are as follows: M73218 for HEV-1; M74506 for HEV-2; AF082843 for HEV-3; AJ272108 for HEV-4; AB573435 for HEV-5; AB602441 for HEV-6; KJ496143 for HEV-7; AY535004 for Orthohepevirus B; AB847309, AB847305, AB847306, AB847308, AB847307, GU345043, GU345042, JN167537, and JN167538 for HEV-C1; AB890001, JN998607, and JN998606 for HEV-C2; JQ001749 for Orthohepevirus D; and HQ731075 for Piscihepevirus A. RdHEVAC14 and RdHEVAC86 for RdHEVAc; RdHEVEM40 and RdHEVEm67 for RdHEVEm. Nucleotide for nt; amino acid for aa; and not available for NA.