. Author manuscript; available in PMC: 2018 Dec 8.

Published in final edited form as: Science. 2018 Jun 8;360(6393):eaar6343. doi: 10.1126/science.aar6343

Table 2.

Great ape gene/transcript annotation summary.

	Clint_PTRv1	GSMRT3.2	Susie_PABv1
Genes	55,894	55,985	55,522
Orthologs in human	55,594 (95.4%)^a	55,570 (95.4%)^a	54,900 (94.2%)^a
Isoforms	192,725	192,734	190,716
Coding genes	19,153	19,311	19,043
Novel^b	300	415	322
Coding isoforms	92,610	92,713	91,578
Transcript predictions with novel splice junctions^c	2,809	2,902	2,333
Percent of transcripts with TPM > 0.1	66.3	67.3	50.6
Percent of transcripts supported by Iso-Seq reads	66.5	46.5	63.4
Previously unannotated exons identified	29	16	16
Putative exons gained in human	57	NA	ND
Putative exons lost in human	13	NA	NA

Percent of GENCODE V27 represented.

Novel predicted genes based on GENCODE V27 annotation.

Novel splice junctions compared to liftover annotation set from the human reference genome where splice junction is supported by NHP RNA-seq.

ND denotes no data; NA denotes not applicable to this genome.