Table 3.

Summary of sequence changes in early domestication-related genes

Sample	Sub-spp	Awn lengtha	Shattering degreeb	Prog1	OsLG1	Sh4	An1	An2 (LABA1)	RC	Sh1
				SNP	SNP	SNP	TE ins or 1-bp del	1-bp del or 29-bp ins	14-bp del	SNP
Bohai	J	+++	+++	T	A	T	TE ins	29-bp ins	14-bp del	G
Chuan No4	J	+++	++	T	A	T	TE ins	29-bp ins	14-bp del	G
Kabotsumame	J	+++	+++	T	A	T	TE ins	29-bp ins	14-bp del	G
Matara	J	++	+++	T	A	T	TE ins	29-bp ins	14-bp del	G
Montana	J	–	++	T	A	T	TE ins	Both	14-bp del	G
Muteka	J	++	++	T	A	T	TE ins	29-bp ins	No deletion	G
Nakabo	J	–	++	T	A	T	TE ins	29-bp ins	14-bp del	G
Nakairitsu	J	++	++	T	A	T	TE ins	29-bp ins	14-bp del	G
Purahaitairin	J	+	+	T	A	T	TE ins	29-bp ins	14-bp del	G
RuiYan	J	++	++	T	A	T	TE ins	29-bp ins	No deletion	G
Nipponbare	J	–	–	T	A	T	TE ins	29-bp ins	14-bp del	T
Tainung 67	J	–	+	T	A	T	TE ins	29-bp ins	14-bp del	G
Nobohai	I	–	+	T	A	T	1-bp del	Both	14-bp del	G
Parahainakoru	I	–	+	T	A	T	Both	Both	14-bp del	G
Ragarasu	I	–	+	T	A	T	1-bp del	Both	14-bp del	G
Tangengenrankatsu	I	–	++	T	A	T	1-bp del	Both	14-bp del	G
Tapopuri	I	–	++	T	A	T	1-bp del	Both	14-bp del	G
IR64	I	–	+	T	A	T	TE ins	Both	14-bp del	G
Kasalath	I	+++	+++	T	A	T	Both	Both	No deletion	G
Wild rice	–	+++++	+++++	A	G	G	Neither	Neither	No deletion	G

^aAwn length: ++++, > 10 cm; +++, 5–10 cm; ++, 2–3 cm; −-, awnless

^bShattering: the number of 『+』 signs represents the degree of shattering