Table 1.
Summary of differentially expressed contigs in midguts between all diet group pairs for 4th instar T. ni.
| Gene category | Contig ID | Contig length (bp) | Sequence description | Cabbage relative to artificial | Potato relative to cabbage | Potato relative to artificial |
|---|---|---|---|---|---|---|
| Chitin Synthase | gi|687040850 | 227 | Chitin synthase A | – | – | ↓ 13x |
| Chitinases | 11990 | 1,399 | Chitinase domain | ↓ 3x | – | – |
| 17052/16243/ gi|687056067 | 1,186 | Viral-like chitinase | ↓ 10x | – | ↓ 13x | |
| 17700 | 676 | Chitinase | – | – | ↓ 8x | |
| gi|687027891 | 9,581 | Chitinase 10 | – | ↓ 4x | ↓ 10x | |
| gi|687027960 | 3,179 | Chitinase 3 | ↓ 9x | – | ↓ 13x | |
| gi|687094659/8386 | 1,202 | Chitinase 2 | ↓ 17x | ↓ 4x | ↓ 68x | |
| gi|687131816 | 2,030 | Endochitinase A1-like | – | – | ↓ 3x | |
| Chitin Deacetylase | 16131/11096 | 1,843 | Chitin deacetylase 1 | – | ↓ 2x | ↓ 6x |
| Glycoprotein | 838 | 4,146 | Glycoprotein 1-like | ↓ 3x | – | – |
| 9115 | 789 | Glycoprotein 2B-like | ↑ 3x | – | – | |
| 12335 | 654 | Glycoprotein 2B-like | ↑ 3x | – | – | |
| 12706 | 1,400 | Glycoprotein 1-like | ↓ 4x | – | ↓ 4x | |
| 13031 | 1,431 | Glycoprotein 1-like | ↑ 3x | – | – | |
| 13710 | 2,774 | Glycoprotein 2C-like | ↑ 25x | – | ↑ 34x | |
| 13711 | 2,440 | Glycoprotein 2C-like | ↑ 32x | – | ↑ 42x | |
| 13714 | 559 | Glycoprotein 2C-like | ↑ 28x | – | – | |
| 17683 | 603 | Glycoprotein 2C-like | – | – | ↑ 6x | |
| 18285 | 471 | Endocuticle structural glycoprotein ABD-5-like | ↑ 7x | – | ↑ 7x | |
| 18333 | 590 | Glycoprotein ABD-5-like | ↑ 8x | – | – | |
| Ecdysone Inducibles | 3024 | 1,783 | Ecdysone-induced protein 74EF isoform A | ↑ 4x | – | ↑ 4x |
| 5946 | 453 | Ecdysone receptor transcript variant X2 | ↓ 5x | – | ↓ 4x | |
| 6995 | 571 | Ecdysteroid-induced (E75) | – | – | ↓ 4x | |
| 8772 | 1,940 | Zinc finger protein on ecdysone puffs | ↓ 3x | – | – | |
| 16286 | 1,185 | 3-dehydrecdysone 3b-reductase | ↓ 4x | – | ↓ 6x | |
| 18136 | 2,470 | 20-hydroxy-ecdysone receptor | ↓ 3x | ↑ 15x | ↑ 4x | |
| gi|687100743 | 380 | Ecdysone oxidase gene | ↓ 4x | – | ↓ 4x | |
| Juvenile hormone inducibles | 2789 | 3,733 | Juvenile hormone-inducible protein | ↓ 5x | – | – |
| 4247 | 1,993 | Juvenile hormone epoxide hydrolase precursor | – | ↑ 3x | – | |
| 6007 | 1,020 | Juvenile hormone epoxide hydrolase-like | – | ↓ 7x | ↓ 11x | |
| 9577 | 2,010 | Juvenile hormone esterase-like isoform | ↓ 4x | – | – | |
| 11982 | 494 | Juvenile hormone esterase precursor (JHE) | ↓ 19x | – | ↓ 27x | |
| 13294 | 2,389 | Juvenile hormone epoxide hydrolase-like protein | – | ↓ 5x | – | |
| 14365 | 2,322 | Juvenile hormone esterase-like | – | – | ↓ 5,811x | |
| 16406 | 2,351 | Juvenile hormone sensitive hemolymph protein | – | – | ↓ 8x | |
| 16491 | 850 | Juvenile hormone-inducible protein | – | ↓ 3x | ↓ 4x | |
| 17075 | 1,195 | Juvenile hormone esterase-like | – | – | ↓ 5x | |
| 17228 | 1,428 | Juvenile hormone epoxide hydrolase-like | – | – | ↓ 25x | |
| 18269 | 714 | Juvenile hormone binding-like protein | ↓ 24x | – | ↓ 78x | |
| gi|687052097 | 205 | Juvenile hormone esterase precursor (JHE) | ↓ 25x | – | ↓ 35x | |
| Gelsolin | 14408 | 1,099 | Gelsolin-like | ↑ 3x | – | – |
| Mucins | 2899 | 4,725 | Mucin-12-like | – | – | ↓ 8x |
| 8946 | 4,324 | Mucin-2-like | ↓ 3x | – | ↓ 6x | |
| 16236 | 442 | Intestinal mucin | – | ↑ 10x | ↑ 11x | |
| 17180 | 417 | Mucin-5AC | – | – | ↓ 7x | |
| gi|687050021 | 288 | Mucin-5AC | ↓ 13x | – | – | |
| gi|687060229 | 294 | Mucin-5AC-like | ↓ 16x | – | ↓ 19x | |
| gi|687064266 | 219 | Mucin-5AC-like | ↓ 19x | – | ↓ 13x | |
| gi|687073777 | 537 | Mucin-5AC-like | ↓ 17x | – | ↓ 10x | |
| gi|687079129 | 295 | Mucin-5AC-like | ↓ 8x | – | ↓ 10x | |
| gi|687080496 | 259 | Mucin-5AC-like | ↓ 12x | – | ↓ 5x | |
| gi|687085871 | 401 | Mucin-2-like | ↑ 5x | – | – | |
| gi|687093538 | 984 | Mucin-5AC | – | – | ↓ 12x | |
| Lipases | 3030 | 1,018 | Lipase 3-like | ↑ 8x | ↓ 7x | – |
| 10385 | 437 | Lipase (Lipn004) | – | – | ↓ 3x | |
| 10606 | 1,230 | Lipase 3-like | ↓ 4x | ↓ 6x | ↓ 26x | |
| 11520 | 893 | Lipase-like | – | – | ↓ 3x | |
| 15809 | 1,398 | Lipase 1-like | – | ↓ 4x | ↓ 4x | |
| 16200 | 153 | Insect intestinal lipase 7 | – | ↑ 4x | – | |
| 16325 | 797 | Insect intestinal lipase 6 | – | ↑ 4x | – | |
| 16375 | 977 | Insect intestinal lipase 6 | ↓ 3x | ↓ 4x | ↓ 15x | |
| 16377 | 660 | Lipase 3-like | ↑ 3x | – | ↑ 6x | |
| 16389 | 885 | Lipase-like | – | ↓ 159x | ↓ 96x | |
| 16607 | 559 | Lipase ABHD12 | ↓ 5x | – | ↓ 5x | |
| 16887 | 568 | Lipase member H-like | ↑ 23x | – | ↑ 48x | |
| 17002 | 670 | Bile salt-activated lipase-like | ↑ 5x | – | ↑ 3x | |
| 17081 | 483 | Lipase-like | – | – | ↓ 4x | |
| 17396 | 880 | Lipase 3-like | ↑ 69x | – | ↑ 35x | |
| gi|687078584 | 265 | Lipase-like | ↓ 26x | ↑ 608x | ↑ 23x | |
| gi|687085460 | 404 | Lipase-like | ↓ 20x | ↑ 468x | ↑ 23x | |
| gi|687101661 | 671 | Lipase-related Protein 1-like | ↓ 6x | – | ↑ 4x | |
| gi|687116092 | 1,317 | Lipase-like | ↓ 4x | – | ↑ 4x | |
| gi|687125502 | 266 | Lipase | ↓ 5x | – | – |
Dash, no significant change; ↑, increased; ↓, decreased.