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The association between TEs and three functionally relevant gene categories based on permutation test using RegioneR R package. Putative effectors (A), secreted proteins (B) and genes in secondary metabolite clusters (C) were significantly closer to TEs as compared to the random genes in the genome. A set of 1,000 other genes (D) was taken as negative control for the test that showed these genes were not significantly associated with TEs.
