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. 2018 Oct 4;9:2367. doi: 10.3389/fmicb.2018.02367

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Copyright © 2018 Rao, Sharda, Oddi and Nandineni.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Composition of SSRs in seven Colletotrichum species showing the distribution of SSRs in genomes in terms of (A) their number, (B) relative density (size of each SSR type in bp/Mb of genome), (C) relative abundance (number of SSRs/Mb of genome), and (D) the number of SSRs in coding (exons) and non-coding regions (introns, intergenic regions). Ascochyta rabiei was taken as a reference for accuracy of SSR detection. In all the species, the mononucleotide repeats were the most abundant SSR type except for C. orbiculare, in which tri- and di-nucleotide repeats were more predominant. SSRs were mainly concentrated in intergenic regions. Exons had high proportion of trinucleotide repeats in four species, whereas mononucleotide repeats were more than the trinucleotide repeats in coding region of C. truncatum.