Table 3.
The composition of major families of TEs in C. truncatum.
| Class | Count | Size (bp) | Proportion of genome (%) | |
|---|---|---|---|---|
| Total sequences | 70 | 57912832 | ||
| Ancestral repeats | 19879 | 3446297 | 5.95 | |
| Lineage specific repeats | 259 | 74689 | 0.13 | |
| Total repeats | 20138 | 3520986 | 6.08 | |
| Total TEs | 6035 | 2831668 | 4.89 | |
| LTR | Gypsy | 833 | 1350797 | 2.33 |
| Copia | 195 | 397087 | 0.69 | |
| LINE | CRE-Cnl1 | 56 | 60017 | 0.10 |
| CRE | 30 | 22296 | 0.04 | |
| SINE | 120 | 10372 | 0.02 | |
| DNA | MULE-MuDR | 52 | 93987 | 0.16 |
| TcMar-Fot1 | 27 | 21534 | 0.04 | |
| PiggyBac | 70 | 13388 | 0.02 | |
| Unknown | 1804 | 559668 | 0.97 | |
| Unspecified | 2848 | 302522 | 0.52 | |