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. 2018 Oct 10;3(5):e00486-18. doi: 10.1128/mSphere.00486-18

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Copyright © 2018 Forde et al.

This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license.

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FIG 2 — Phylogenetic tree of ST95 E. coli isolates. Maximum-likelihood phylogenetic tree of MS8345 and 65 additional complete E. coli chromosomes built using 111,631 core single-nucleotide polymorphisms (SNPs). The ST95 clonal complex is highlighted in red. The enlarged area displays a high-resolution maximum-likelihood phylogenetic tree of 7 ST95 isolates grouped into two discrete subclades in which MS8345 clusters with S88 and APEC-O1. Strains carrying a Col-like (ColV or ColBM) virulence plasmid are highlighted in orange. The tree was rooted using Escherichia fergusonii (dashed branch). Scale bars indicate branch lengths in numbers of SNPs. Phylogeny was visualized using FigTree (http://tree.bio.ed.ac.uk/software/figtree/).