Table 3.

Gene Ontology (GO) Functional Enrichment Analysis of differentially expressed genes in hop

GO ID	Ontology	Category	Number of DEGs in subgroup	Number of unigenes in subgroup	P-value	FDR
GO:0008152	metabolic process	P	161	10,614	8.30E-21	6.80E-19
GO:0009058	biosynthetic process	P	62	5118	0.00039	0.008
GO:0009987	cellular process	P	32	11,684	9.50E-07	3.20E-05
GO:0050896	response to stimulus	P	32	4057	0.53	1
GO:0006950	response to stress	P	24	2320	0.11	0.82
GO:0032502	developmental process	P	22	2304	0.21	1
GO:0048856	anatomical structure development	P	10	1726	0.88	1
GO:0003824	catalytic activity	F	176	9638	4.60E-34	2.30E-32
GO:0005488	binding	F	112	11,258	0.0025	0.031
GO:0016787	hydrolase activity	F	74	3478	2.90E-15	7.20E-14
GO:0016740	transferase activity	F	55	3321	1.50E-07	2.50E-06
GO:0005215	transporter activity	F	17	1473	0.081	0.5
GO:0003700	transcription factor activity	F	8	2173	1	1
GO:0005623	cell	C	129	15,217	0.16	1
GO:0016020	membrane	C	71	4068	1.40E-10	6.40E-09
GO:0005737	cytoplasm	C	48	6822	0.83	1
GO:0009536	plastids	C	15	2965	0.98	1

P Biological process, F Molecular function, C Cellular component