Table 3. List of the highest significant SNP from all five analyses and for all four traits.
| Trait | GWAS or MA | Top SNP | SSCa | Location bp | -log10 (p value) | q value | Total SNPsb | Other SSCc |
|---|---|---|---|---|---|---|---|---|
| ADG | D1 | ALGA0123907 | 2 | 2,556,939 | 7.26 | 0.00206 | 16 (6) | 7, 13, 16 |
| D2 | H3GA0013062 | 4 | 74,916,258 | 4.03 | 0.47904 | - | - | |
| D3 | H3GA0024295 | 8 | 11,805,802 | 4.47 | 0.97386 | 1 | - | |
| D1D2D3 | ALGA0123907 | 2 | 2,556,939 | 6.85 | 0.00224 | 8 (3) | 7, 8 | |
| MA | ALGA0123907 | 2 | 2,556,939 | 8.16 | 0.00020 | 11 (5) | 7 | |
| BFT | D1 | ASGA0085597 | 2 | 1,083,343 | 10.71 | 3.29e-07 | 48 (22) | 1, 10 |
| D2 | INRA0024524 | 7 | 26,069,284 | 13.56 | 1.12e-09 | 179 (93) | 5,13 | |
| D3 | INRA0015172 | 4 | 79,915,989 | 5.47 | 0.09920 | 10 | 1, 2 | |
| D1D2D3 | ASGA0085597 | 2 | 1,083,343 | 12.14 | 1.68e-08 | 34(16) | 1, 7 | |
| MA | ASGA0008415 | 2 | 3,895,569 | 14.01 | 2.74e-10 | 28 (16) | 1, 7 | |
| MFR | D1 | MARC0044928 | 2 | 2,494,326 | 21.28 | 1.93e-17 | 103 (76) | 1 |
| D2 | ASGA0089068 | 2 | 3,237,229 | 5.35 | 0.16883 | 7 | 12 | |
| D3 | ALGA0011643 | 2 | 7,557,050 | 5.70 | 0.04177 | 15 | - | |
| D1D2D3 | ASGA0085597 | 2 | 1,083,343 | 20.84 | 2.89e-17 | 43 (22) | 1 | |
| MA | ASGA0085597 | 2 | 1,083,343 | 24.04 | 1.63e-20 | 55 (39) | 1 | |
| CRCL | D1 | MARC0070553 | 17 | 15,827,832 | 28.68 | 9.25e-25 | 98 (47) | 7,16 |
| D2 | DIAS0000554 | 7 | 34,166,932 | 14.04 | 3.68e-10 | 146 (93) | 13 | |
| D3 | H3GA0004878 | 1 | 265,179,997 | 5.65 | 0.04440 | 11 | - | |
| D1D2D3 | ALGA0093478 | 17 | 16,919,581 | 17.88 | 4.08e-14 | 56 (29) | 1, 7 | |
| MA | ALGA0093478 | 17 | 16,919,581 | 19.08 | 2.59e-15 | 57 (26) | 1, 7 |
aSus Scrofa chromosome;
bTotal number of SNPs significant at a nominal level (total number SNPs significant at a genome-wide level);
cOther chromosomes on which associations surpassing the nominal significance level were detected.