Table 4. Number of genomic clusters, localization and number of significant SNPs.
Trait | Analysis GWAS/MA | Cluster number | SSCa | Cluster boundaries (bp) | Length in Mb | Number of significant SNPsb |
---|---|---|---|---|---|---|
ADG | D1 | 1 | 2 | 631,324–2,586,096 | 1.94 | 7 (5) |
D1D2D3 | 2 | 2 | 2,556,939–2,586,096 | 0.03 | 3 (3) | |
MA | 3 | 2 | 141,798–2,586,096 | 2.44 | 9 (5) | |
BFT | D1 | 4 | 2 | 236,179–5,189,397 | 4.95 | 31 (23) |
D2 | 5 | 7 | 19,567,933–37,145,252 | 17.58 | 165 (92) | |
D1D2D3 | 6 | 2 | 141,798–3,895,569 | 3.75 | 13 (13) | |
7 | 7 | 26,522,116–28,252,780 | 1.73 | 5 (2) | ||
MA | 6 | 2 | 141,798–3,895,569 | 3.75 | 17 (15) | |
MFR | D1 | 8 | 2 | 70,140–13,307,467 | 13.24 | 98 (76) |
D1D2D3 | 6 | 2 | 141,798–3,895,569 | 3.75 | 18 (16) | |
9 | 2 | 7,536,991–8,647,689 | 1.11 | 6 (2) | ||
10 | 2 | 12,168,412–13,294,789 | 1.13 | 11 (3) | ||
MA | 11 | 2 | 141,798–10,254,380 | 10.11 | 37 (30) | |
12 | 2 | 12,275,048–13,294,789 | 1.02 | 9 (8) | ||
CRCL | D1 | 13 | 7 | 97,195,350–99,887,568 | 2.69 | 15 (10) |
14 | 17 | 12,361,530–19,474,175 | 7.11 | 42 (27) | ||
15 | 17 | 21,832,087–23,773,788 | 1.94 | 11 (10) | ||
D2 | 16 | 7 | 19,567,933–36,795,710 | 17.23 | 135 (92) | |
D1D2D3 | 17 | 7 | 23,659,424–26,522,116 | 2.86 | 8 (5) | |
18 | 7 | 97,147,161–99,424,987 | 2.28 | 9 (7) | ||
19 | 17 | 13,692,477–19,474,175 | 5.78 | 21 (16) | ||
MA | 20 | 7 | 97,147,161–99,491,117 | 2.34 | 10 (7) | |
19 | 17 | 13,692,477–19,474,175 | 5.78 | 27 (17) |
aSus Scrofa chromosome;
bTotal number of SNPs significant at a nominal level (total number SNPs significant at a genome-wide level).