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. 2018 Oct 11;13(10):e0205576. doi: 10.1371/journal.pone.0205576

Table 4. Number of genomic clusters, localization and number of significant SNPs.

Trait Analysis GWAS/MA Cluster number SSCa Cluster boundaries (bp) Length in Mb Number of significant SNPsb
ADG D1 1 2 631,324–2,586,096 1.94 7 (5)
D1D2D3 2 2 2,556,939–2,586,096 0.03 3 (3)
MA 3 2 141,798–2,586,096 2.44 9 (5)
BFT D1 4 2 236,179–5,189,397 4.95 31 (23)
D2 5 7 19,567,933–37,145,252 17.58 165 (92)
D1D2D3 6 2 141,798–3,895,569 3.75 13 (13)
7 7 26,522,116–28,252,780 1.73 5 (2)
MA 6 2 141,798–3,895,569 3.75 17 (15)
MFR D1 8 2 70,140–13,307,467 13.24 98 (76)
D1D2D3 6 2 141,798–3,895,569 3.75 18 (16)
9 2 7,536,991–8,647,689 1.11 6 (2)
10 2 12,168,412–13,294,789 1.13 11 (3)
MA 11 2 141,798–10,254,380 10.11 37 (30)
12 2 12,275,048–13,294,789 1.02 9 (8)
CRCL D1 13 7 97,195,350–99,887,568 2.69 15 (10)
14 17 12,361,530–19,474,175 7.11 42 (27)
15 17 21,832,087–23,773,788 1.94 11 (10)
D2 16 7 19,567,933–36,795,710 17.23 135 (92)
D1D2D3 17 7 23,659,424–26,522,116 2.86 8 (5)
18 7 97,147,161–99,424,987 2.28 9 (7)
19 17 13,692,477–19,474,175 5.78 21 (16)
MA 20 7 97,147,161–99,491,117 2.34 10 (7)
19 17 13,692,477–19,474,175 5.78 27 (17)

aSus Scrofa chromosome;

bTotal number of SNPs significant at a nominal level (total number SNPs significant at a genome-wide level).