Table 2.
Species | Strain No. | Host/insect | Country | Genbank No. | Reference | |
---|---|---|---|---|---|---|
ITS | β-tubulin | |||||
Sporothrix abietina | CBS125.89 | Abies vejari | Mexico | AF484453 | KX590755 | de Beer et al. 2003 |
S. aurorae | CMW19362 | Pinus eliottii | South Africa | DQ396796 | DQ396800 | Francois et al. 2006 |
S. bragantina | CBS 474.91 | Soil | Brazil | FN546965 | FN547387 | Madrid et al. 2010 |
CBS 430.92 | Soil | Brazil | FN546964 | FN547386 | Madrid et al. 2010 | |
S. brasiliensis | Ss383 | Felis catus | Brazil | KP890194 | FN547387 | Araujo et al. 2015 |
S. brunneoviolacea | CBS 124562 | Soil | Spain | FN546959 | FN547385 | Madrid et al. 2010 |
CBS 124564 | Soil | Spain | FN546958 | FN547384 | Madrid et al. 2010 | |
S. dentifunda | CMW13016 | Quercus wood | Hungary | AY495434 | AY495445 | Aghayeva et al. 2005 |
CMW13017 | Quercus wood | Poland | AY495435 | AY495446 | Aghayeva et al. 2005 | |
S. epigloea | CBS 573.63 | Tremella fusiformis | Argentina | KX590817 | KX590760 | de Beer et al. 2016 |
S. eucalyptigena | CPC 24638 | Eucalyptus marginata | Western Australia | KR476721 | N/A | Crous et al. 2015 |
S. gemella | CMW23057 | Protea caffra | South Africa | DQ821560 | DQ821554 | Roets et al. 2008 |
S. inflata | CMW12529 | Soil | Canada | AY495428 | AY495438 | Aghayeva et al. 2005 |
CMW12527 | wheat-field soil | Germany | AY495426 | AY495437 | Aghayeva et al. 2005 | |
S. nebularis | CMW27319 | Orthotomicus erosus | Spain | DQ674375 | N/A | Romón et al. 1900 |
CMW27900 | O. erosus | Spain | DQ674376 | N/A | Romón et al. 1900 | |
S. pallida | CBS131.56 | Stemonitis fusca | Japan | EF127880 | EF139110 | de Meyer et al. 2008 |
CBS150.87 | S. fusca | Japan | EF127879 | EF139109 | de Meyer et al. 2008 | |
S. palmiculminata | CMW23049 | Protea repens | South Africa | DQ316191 | DQ821543 | Francois et al. 2006 |
S. phasma | CMW20676 | P. laurifolia | South Africa | DQ316219 | DQ821541 | Francois et al. 2006 |
S. proteara | CMW1103 | P. caffra | South Africa | DQ316203 | DQ316165 | Francois et al. 2006 |
S. schenckii | MITS2474 | N/A | Mexico | KP132783 | N/A | Irinyi et al. 2015 |
CBS 938.72 | Human | Franch | KP017094 | N/A | Irinyi et al. 2015 | |
S. fusiforis | CMW9968 | Populus nigra | Azerbaijan | AY280481 | AY280461 | Aghayeva et al. 2004 |
S. lunata | CMW10563 | Carpinus betulus | Austria | AY280485 | AY280466 | Zhou et al. 2006 |
S. narcissi | CBS138.50 | N/A | Canada | AY194510 | KX590765 | Jacobs et al. 2003 |
S. splendens | CMW872 | Protea repens | South Africa | DQ316215 | DQ316177 | Francois et al. 2006 |
S. stenoceras | CMW2524 | Acacia mearnsii | South Africa | AF484459 | AY280473 | de Beer et al. 2003 |
CBS237.32 | pine pulp | Norway | AF484462 | N/A | de Beer et al. 2003 | |
S. thermara | CMW38930 | Euphorbia ingens | South Africa | KR051115 | KR051103 | Ja et al. 2016 |
CMW38929 | E. ingens | South Africa | KR051114 | KR051102 | Ja et al. 2016 | |
S. stylites | CMW14543 | Pine utility poles | Australia | EF127883 | EF139096 | de Meyer et al. 2008 |
Ophiostoma adjuncti | CMW135 | Pinus ponderosa | USA | AY546696 | N/A | Zhou et al. 2004 |
O. allantosporum | CBS185.86 | P. pinaster | Europe | AY934506 | N/A | Villarreal et al. 2005 |
O. angusticollis | Zoq16 | N/A | N/A | EU109671 | N/A | de Beer et al. 2016 |
CBS186.86 | Pinus banksiana | USA | AY924383 | KX590757 | Villarreal et al. 2005 | |
O. bicolor | CBS492.77 | Piceaglauca/Ips sp. | USA | DQ268604 | DQ268635 | Massoumi et al. 2007 |
O. candidum | CMW26484 | Eucalyptus cloeziana | South Africa | HM051409 | HM041874 | Nkuekam et al. 2012 |
CMW26483 | E. cloeziana | South Africa | HM051408 | HM041873 | Nkuekam et al. 2012 | |
O. catonianum | C1084 | Pyrus | Italy | AF198243 | N/A | Gorton et al. 2004 |
O. coronatum | CBS 497.77 | Pinus pinaster | Iberian Peninsula | AY924385 | KX590758 | Villarreal et al. 2005 |
O. cupulatum | C1194 | Pseudotsuga | USA | AF198230 | N/A | Uzunovic et al. 2000 |
O. deltoideosporum | WIN(M)41 | N/A | N/A | EU879121 | N/A | Mullineux and Hausner 2009 |
O. fasciatum | UM56 | Pseudotsuga menziesii | CanadaCanada | EU913720 | EU913759 | Plattner et al. 2009 |
O. floccosum | C01-021 | Girdled Picearubens | Canada | AY194504 | N/A | Jacobs et al. 2003 |
C1086 | Soil | Sweden | AF198231 | N/A | Gorton et al. 2004 | |
O. fumeum | CMW26813 | Eucalyptus cloeziana | South Africa | HM051412 | HM041878 | Nkuekam et al. 2012 |
CMW26818 | E. cloeziana | South Africa | HM051415 | HM041877 | Nkuekam et al. 2012 | |
O. fuscum | CMW23196 | Picea abies | Finland | HM031504 | HM031563 | Linnakoski et al. 2010 |
O. himai ulmi | C1183 | Ulmus | India | AF198233 | N/A | Harrington et al. 2001 |
C1306 | Ulmus | India | AF198234 | N/A | Harrington et al. 2001 | |
O. ips | CMW7075 | N/A | USA | AY546704 | N/A | Zhou et al. 2004 |
CMW22843 | Orthotomicus erosus | N/A | DQ539549 | N/A | Romón et al. 2007 | |
O. japonicum | YCC099 | N/A | N/A | GU134169 | N/A | Yamaoka et al. 2009 |
O. kryptum | DAOM 229701 | Piceaabies/Tetropium sp. | Austria | AY304436 | AY305685 | Jacobs and Kirisits 2013 |
DAOM 229702 | Larixdecidua/T.gabrieli | Austria | AY304434 | AY305686 | Jacobs and Kirisits 2013 | |
K6/3/2 | Piceaabies/Tetropium sp. | Austria | AY304428 | AY305687 | Jacobs and Kirisits 2013 | |
O. minus | PIR 18S | N/A | N/A | AY934509 | N/A | Villarreal et al. 2005 |
CMW22802 | Dryocoetes autographus | N/A | DQ539507 | N/A | Romón et al. 2005 | |
RJ-T144 | Tetropium sp. | Poland | AM943886 | N/A | Jankowiak and KolařÍk 2010 | |
CMW28117 | Piceaabies/Tomicusminor | Russia | HM031497 | HM031535 | Linnakoski et al. 2010 | |
AU58.4 | Lodgepole pine | Canada | AF234834 | N/A | Gorton et al. 2004 | |
DAOM 212686 | N/A | Canada | AY304438 | AY305690 | Jacobs and Kirisits 2013 | |
O. micans | CMW:38903 | Picea crassifolia | China | KU184432 | KU184303 | Yin et al. 2016 |
O. montium | CMW13221 | Pinusponderosa/ Dendroctonusponderosae | USA | AY546711 | N/A | Zhou et al. 2004 |
CMW13222 | P.contorta/D.ponderosae | Canada | AY546712 | N/A | Zhou et al. 2004 | |
O. nigrocarpum | CMW 560 | Abies sp. | USA | AY280489 | AY280479 | Aghayeva et al. 2004 |
CMW651 | Pseudotsuga menziesii | USA | AY280490 | AY280480 | Aghayeva et al. 2004 | |
O. nitidum | CMW:38907 | Picea crassifolia | China | KU184437 | KU184308 | Yin et al. 2016 |
O. novo ulmi | C1185 | Ulmus | Russia | AF198235 | N/A | Harrington et al. 2001 |
C510 | Ulmus | USA | AF198236 | N/A | Harrington et al. 2001 | |
O. olgensis | CXY1404 | Larixgmelini/Ipssubelongatus | China | KU551299 | KU882938 | Wang et al. 2016 |
CXY1405 | L.gmelini/I.subelongatus | China | KU551300 | KU882939 | Wang et al. 2016 | |
CXY1410 | L.gmelini/I.subelongatus | China | KU551303 | KU882942 | Wang et al. 2016 | |
O. pallidulum | CMW23279 | Pinussylvestris/Hylastesbrunneus | Finland | HM031509 | N/A | Linnakoski et al. 2010 |
CMW23278 | P.sylvestris/ H.brunneus | Finland | HM031510 | HM031566 | Linnakoski et al. 2010 | |
O. piceae | C1087 | N/A | Germany | AF198226 | N/A | Uzunovic et al. 2000 |
C1246 | Pseudotsuga | USA | AF198227 | N/A | Uzunovic et al. 2000 | |
O. pseudotsugae | 92-634/302/6 | Pinusmenziesii/Dendroctonusfrontalis | Canada | AY542502 | AY548744 | Gorton et al. 2004 |
D48/3 | N/A | Canada | AY542501 | AY542511 | Gorton et al. 2004 | |
O. proteasedis | CMW 28601 | Protea caffra | Zambia | EU660449 | EU660464 | Roets et al. 2009 |
O. pulvinisporum | CMW9022 | Pinuspseudostrobus/Dendroctonusmexicanus | Mexico | AY546714 | DQ296100 | Zhou et al. 2004 |
O. qinghaiense | CMW:38902 | Picea crassifolia | China | KU184445 | KU184316 | Yin et al. 2016 |
O. querci | C970 | Quercus | United Kingdom | AF198239 | N/A | Gorton et al. 2004 |
C969 | Quercus | United Kingdom | AF198238 | N/A | Gorton et al. 2004 | |
C1085 | Fagus | Germany | AF198237 | N/A | Gorton et al. 2004 | |
O. rostrocoronatum | CBS434.77 | Woodpulp | USA | AY194509 | KX590771 | Jacobs et al. 2003 |
O. saponiodorum | CMW29497 | Piceaabies/Ipstypographus | Finland | HM031507 | HM031571 | Linnakoski et al. 2010 |
CMW28135 | P. abies | Russia | HM031508 | N/A | Linnakoski et al. 2010 | |
O. sejunctum | Ophi 1B | N/A | N/A | AY934520 | N/A | Villarreal et al. 2005 |
Ophi 1A | N/A | N/A | AY934519 | N/A | Villarreal et al. 2005 | |
O. setosum | AU160-38 | Pseutotsugae menziesii | North America | AF128929 | N/A | Uzunovic et al. 2000 |
CMW12378 | Tsuga sp. | China | FJ430485 | FJ430515 | Grobbelaar et al. 2009 | |
O. tenellum | CBS189.86 | Pinus banksiana | USA | AY934523 | KX590772 | Villarreal et al. 2005 |
O. tetropii | C00-027a | Tetropium fuscum | Canada | AY194482 | NA | Jacobs et al. 2003 |
C00-003 | T. fuscum | Canada | AY194485 | AY305701 | Jacobs et al. 2003 | |
O. ulmi | C1182 | Ulmus | Netherlands | AF198232 | N/A | Harrington et al. 2001 |
Graphilbum crescericum | CMW 22829 | Hylastes ater | Spain | DQ539535 | N/A | Romón et al. 2007 |
Gra. fragrans | C1224 | Pinus sylvestris | Sweden | AF198248 | N/A | Harrington et al. 2001 |
Gra. microcarpum | YCC612 | Japanese larch logs | Japan | GU134170 | N/A | Yamaoka et al. 2009 |
Gra. rectangulosporium | MAFF 238951 | N/A | Japan | AB242825 | N/A | Ohtaka et al. 2006 |
Raffaelea canadensis | CBS 168.66 | N/A | N/A | GQ225699 | N/A | Kyunghee et al. 2009 |
Leptographium lundbergii | DAOM 64746 | N/A | N/A | EU879151 | AY534943 | Mullineux and Hausner 2009 |
L. truncatum | WIN(M)1435 | Pinus taeda | South Africa | AY935626 | N/A | Hausner et al. 2005 |
ITS = internal transcribed spacer regions 1 and 2 of the nuclear ribosomal DNA operon, including the 5.8S region; tub2 = beta-tubulin;
N/A= represents information that are not available.
CMW = Culture Collection of the Forestry and Agricultural Biotechnology Institute; CBS = The culture collection of Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands; MAFF = Ministry of Agriculture, Forestry, and Fisheries, Genetic Resource Centre, Culture Collection of National Institute of Agrobiological Resources, Japan; CXY (Culture Xingyao): Culture collection of the Research Institute of Forest Ecology, Environment and Protection, Chinese Academy of Forestry.